Analysis Performed on 2026-02-15
2026-02-15
TORMES version 1.3.0
Assembly statistics
| Field | Description |
|---|---|
| Sample | Name of the sample |
| Reads | Total number of reads after quality filtering |
| AvgReadLen | Average read length after quality filtering |
| Contigs | Number of contigs of the draft genome (>200bp) |
| GenomeLength | Length (bp) of the draft genome |
| LargestContig | Length (bp) of the largest contig in the genome |
| N50 | “Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly” (Miller et al., 2010) |
| GC | GC content (%) of the draft genome |
| Depth | Number of times each nucleotide position in the draft genome has a read that align to that position |
* When already assembled genomes are included for TORMES analysis, “NA” will appear for “Reads”, “AvgReadLen” and “Depth” fields.
Select the parameter
Number of contigs
## Warning: `arrange_()` was deprecated in dplyr 0.7.0.
## Please use `arrange()` instead.
## See vignette('programming') for more helpGenome length
Average genome length per sample = 6.6993736^{6} bpLargest contig length
Average largest contig length per sample = 4.6654377^{5} bpN50
Average N50 per sample = 3.5941638^{5} bpGC content
Average GC content per sample = 65.362%Number of reads
## Warning: Ignoring 13 observations## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.Average read length
## Warning: Ignoring 13 observations## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.Sequencing depth
## Warning: Ignoring 13 observations## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
## Consider 'structure(list(), *)' instead.Taxonomic identification
Taxonomic identification was performed by using Kraken2 (Wood
et al., 2019). Further details can be found in the Kraken2
webpage. Additionally, 16S rRNA genes were extracted from each
genome by using Barrnap and used for
taxonomic classification by using the RDP Classifier (Wang et al.,
2007) at a confidence level of 0.8. Further details can be found in
the RDPTools
webpage.
Taxonomic identification by using Kraken2
The number between brackets refers to the percentage of reads (when starting TORMES from raw reads) or contigs (when starting TORMES from already assembled genomes) from each sample covered by the clade rooted at this taxon.
| Sample | Family | Genus | Species |
|---|---|---|---|
| 113 | Burkholderiaceae (91.88%) | Burkholderia (91.43%) | Burkholderia pseudomallei (85.67%) |
| 114 | Burkholderiaceae (95.63%) | Burkholderia (95.32%) | Burkholderia pseudomallei (88.57%) |
| 115 | Burkholderiaceae (93.79%) | Burkholderia (93.70%) | Burkholderia pseudomallei (87.32%) |
| 116 | Burkholderiaceae (92.83%) | Burkholderia (92.51%) | Burkholderia pseudomallei (87.27%) |
| 117 | Burkholderiaceae (90.71%) | Burkholderia (90.60%) | Burkholderia pseudomallei (85.03%) |
| 118 | Burkholderiaceae (88.19%) | Burkholderia (88.07%) | Burkholderia pseudomallei (83.13%) |
| 119 | Burkholderiaceae (92.99%) | Burkholderia (92.89%) | Burkholderia pseudomallei (86.64%) |
| 120 | Burkholderiaceae (90.81%) | Burkholderia (90.81%) | Burkholderia pseudomallei (85.27%) |
| 121 | Burkholderiaceae (95.77%) | Burkholderia (95.65%) | Burkholderia pseudomallei (91.88%) |
| 122 | Burkholderiaceae (90.83%) | Burkholderia (90.47%) | Burkholderia pseudomallei (82.99%) |
| MinION_barcode19 | Enterococcaceae (100.00%) | Enterococcus (100.00%) | (%) |
| barcode20_genome | Burkholderiaceae (100.00%) | Burkholderia (100.00%) | Burkholderia pseudomallei (100.00%) |
| barcode21_genome | Burkholderiaceae (85.92%) | Burkholderia (85.92%) | Burkholderia pseudomallei (80.28%) |
Taxonomic identification by using RDP Classifier
| Field | Description |
|---|---|
| Sample | Name of the sample where the 16S rRNA gene was found. Note that the same sample might harbor more than one 16S rRNA gene copy. |
| Contig | Name of the contig where the 16S rRNA gene was found. |
| Position | Position within the contig where the 16S rRNA gene was found (begin-end). Note that the 16S rRNA genes identified for one sample might not harbor the same length (fragmented, etc.). |
| Strand | Strand of the 16S rRNA gene defined as forward (+) or reverse (-). |
| Order | Taxonomic order that the 16S rRNA gene was assigned over a confidence level of 0.8. |
| Family | Taxonomic family that the 16S rRNA gene was assigned over a confidence level of 0.8. |
| Genus | Taxonomic genus that the 16S rRNA gene was assigned over a confidence level of 0.8. |
| Sample | Contig | Position | Strand | Order | Family | Genus |
|---|---|---|---|---|---|---|
| 113-16S_rRNA | contig00300 | 308-1835 | (+) | Burkholderiales | Burkholderiaceae | Burkholderia |
| 114-16S_rRNA | contig00364 | 308-1835 | (+) | Burkholderiales | Burkholderiaceae | Burkholderia |
| 115-16S_rRNA | contig00389 | 308-1835 | (+) | Burkholderiales | Burkholderiaceae | Burkholderia |
| 116-16S_rRNA | contig00395 | 308-1835 | (+) | Burkholderiales | Burkholderiaceae | Burkholderia |
| 117-16S_rRNA | contig00350 | 3601-5128 | (-) | Burkholderiales | Burkholderiaceae | Burkholderia |
| 118-16S_rRNA | contig00338 | 308-1835 | (+) | Burkholderiales | Burkholderiaceae | Burkholderia |
| 119-16S_rRNA | contig00383 | 332-1859 | (+) | Burkholderiales | Burkholderiaceae | Burkholderia |
| 120-16S_rRNA | contig00328 | 443-1970 | (+) | Burkholderiales | Burkholderiaceae | Burkholderia |
| 121-16S_rRNA | contig00351 | 443-1970 | (+) | Burkholderiales | Burkholderiaceae | Burkholderia |
| 122-16S_rRNA | contig00367 | 308-1835 | (+) | Burkholderiales | Burkholderiaceae | Burkholderia |
| barcode20_genome-16S_rRNA | contig_1 | 1838133-1839660 | (+) | Burkholderiales | Burkholderiaceae | Burkholderia |
| barcode20_genome-16S_rRNA | contig_1 | 3956-5483 | (-) | Burkholderiales | Burkholderiaceae | Burkholderia |
| barcode20_genome-16S_rRNA | contig_1 | 209003-210528 | (-) | Burkholderiales | Burkholderiaceae | Burkholderia |
| barcode20_genome-16S_rRNA | contig_2 | 1391318-1392846 | (-) | Burkholderiales | Burkholderiaceae | Burkholderia |
| barcode21_genome-16S_rRNA | contig_20 | 7412-8939 | (-) | Burkholderiales | Burkholderiaceae | Burkholderia |
| barcode21_genome-16S_rRNA | contig_5 | 3985-5514 | (-) | Burkholderiales | Burkholderiaceae | Burkholderia |
| barcode21_genome-16S_rRNA | contig_50 | 2728-4261 | (-) | Burkholderiales | Burkholderiaceae | Burkholderia |
| barcode21_genome-16S_rRNA | contig_37 | 193745-195278 | (+) | Burkholderiales | Burkholderiaceae | Mycetohabitans |
Multi-Locus Sequence Typing (MLST)
Further details can be found in mlst web page.
| Symbol | Meaning |
|---|---|
| ~ | novel full length allele similar to match |
| ? | partial match to known allele |
| - | allele missing |
| Scheme | ST | 1 | 2 | 3 | 4 | 5 | 6 | 7 | |
|---|---|---|---|---|---|---|---|---|---|
| 113 | bpseudomallei | - | ace(1) | gltB(1) | gmhD(2) | lepA(1) | lipA(5) | narK(125) | ndh(1) |
| 114 | bpseudomallei | - | ace(1) | gltB(1) | gmhD(2) | lepA(1) | lipA(5) | narK(125) | ndh(1) |
| 115 | bpseudomallei | - | ace(1) | gltB(1) | gmhD(~2) | lepA(1) | lipA(5) | narK(1) | ndh(1) |
| 116 | bpseudomallei | - | ace(1) | gltB(1) | gmhD(2) | lepA(1) | lipA(5) | narK(125) | ndh(1) |
| 117 | bpseudomallei | - | ace(1) | gltB(1) | gmhD(~2) | lepA(1) | lipA(5) | narK(1) | ndh(1) |
| 118 | bpseudomallei | 95 | ace(1) | gltB(1) | gmhD(2) | lepA(2) | lipA(5) | narK(1) | ndh(1) |
| 119 | bpseudomallei | - | ace(1) | gltB(1) | gmhD(~2) | lepA(1) | lipA(5) | narK(1) | ndh(1) |
| 120 | bpseudomallei | - | ace(1) | gltB(1) | gmhD(13) | lepA(1) | lipA(5) | narK(125) | ndh(1) |
| 121 | bpseudomallei | - | ace(1) | gltB(1) | gmhD(13) | lepA(1) | lipA(5) | narK(125) | ndh(1) |
| 122 | bpseudomallei | - | ace(1) | gltB(1) | gmhD(2) | lepA(1) | lipA(6) | narK(1) | ndh(1) |
| barcode20_genome | bpseudomallei | 95 | ace(1) | gltB(1) | gmhD(2) | lepA(2) | lipA(5) | narK(1) | ndh(1) |
| barcode21_genome | bpseudomallei | - | ace(12) | gltB(1) | gmhD(2) | lepA(2) | lipA(5) | narK(6) | ndh(1) |
| MinION_barcode19 | - | - |
Pangenome analysis
Pangenome genes summary
| Genes | Description | Number |
|---|---|---|
| Core genes | (99% <= strains <= 100%) | 0 |
| Soft core genes | (95% <= strains < 99%) | 0 |
| Shell genes | (15% <= strains < 95%) | 7424 |
| Cloud genes | (0% <= strains < 15%) | 2241 |
| Total genes | (0% <= strains <= 100%) | 9665 |
Schematic representation of genes presence (color) or absence (blank) between ssamples:
Pangenome tree based on presence/absence of accesory genes representation
Rectangular (phylogram)
Circular (phylogram)
Rectangular (cladogram)
Circular (cladogram)
Pangenome tree based on core genes alignment representation
Rectangular (phylogram)
Circular (phylogram)
Rectangular (cladogram)
Circular (cladogram)
Antimicrobial resistance
The search of antimicrobial resistance genes was performed by screening the genome against Resfinder (E. Zankari et al., 2012), CARD (A.G. McArthur et al., 2013) and ARG-ANNOT (S.K. Gupta et al., 2014) databases by using Abricate. Any hit with coverage and/or identity below 90% was removed. If you would like to inspect hits with coverage and/or identity below 90%, please go to the corresponing TORMES output directory.
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antimicrobial resistance gene |
| Gaps | Gaps in subject (genome) and query (antimicrobial resistance gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antimicrobial resistance gene |
| Product | Antimicrobial resistance gene product |
| Resistance | Antimicrobial that the gene confers resistance to |
Select the samples and the database
113
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00047 | 8355 | 9164 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00294 | 1147 | 2346 | amrA | 0/0 | 100 | 100 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig00294 | 2363 | 5494 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig00079 | 163 | 1284 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 99 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00076 | 13710 | 16789 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig00047 | 8355 | 9164 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00047 | 8355 | 9164 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
114
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00031 | 26818 | 27627 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00356 | 1107 | 2306 | amrA | 0/0 | 100 | 100 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig00356 | 2323 | 5454 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig00100 | 163 | 1284 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 99 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00057 | 13696 | 16775 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig00031 | 26818 | 27627 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00031 | 26818 | 27627 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
115
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00026 | 26724 | 27533 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00387 | 3226 | 4425 | amrA | 0/0 | 100 | 100 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig00387 | 78 | 3209 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig00243 | 7992 | 9113 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 100 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00042 | 11219 | 14298 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig00026 | 26724 | 27533 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00026 | 26724 | 27533 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
116
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00024 | 26753 | 27562 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00387 | 1072 | 2271 | amrA | 0/0 | 100 | 100 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig00387 | 2288 | 5419 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig00246 | 7597 | 8718 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 99 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00079 | 10978 | 14057 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig00024 | 26753 | 27562 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00024 | 26753 | 27562 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
117
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00042 | 28369 | 29178 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00316 | 3230 | 4429 | amrA | 0/0 | 100 | 100 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig00316 | 82 | 3213 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig00247 | 7955 | 9076 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 100 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00058 | 13670 | 16749 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig00042 | 28369 | 29178 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00042 | 28369 | 29178 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
118
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00043 | 28353 | 29162 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00342 | 1148 | 2347 | amrA | 0/0 | 100 | 100 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig00342 | 2364 | 5495 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig00236 | 7819 | 8940 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 100 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00065 | 11060 | 14139 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig00043 | 28353 | 29162 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00043 | 28353 | 29162 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
119
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00028 | 28359 | 29168 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00377 | 3269 | 4468 | amrA | 0/0 | 100 | 100 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig00377 | 121 | 3252 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig00255 | 194 | 1315 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 100 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00051 | 13663 | 16742 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig00028 | 28359 | 29168 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00028 | 28359 | 29168 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
120
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00001 | 52609 | 53418 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00340 | 1170 | 2369 | amrA | 0/0 | 100 | 100 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig00340 | 2386 | 5517 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig00226 | 141 | 1262 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 100 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00029 | 13671 | 16750 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig00001 | 52609 | 53418 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00001 | 52609 | 53418 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
121
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00039 | 26730 | 27539 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00362 | 1164 | 2363 | amrA | 0/0 | 100 | 100 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig00362 | 2380 | 5511 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig00247 | 161 | 1282 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 100 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00023 | 13757 | 16836 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig00039 | 26730 | 27539 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00039 | 26730 | 27539 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
122
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00034 | 6103 | 6912 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00332 | 2201 | 3400 | amrA | 0/0 | 100 | 99 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig00332 | 3417 | 6548 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig00241 | 7823 | 8944 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 100 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00090 | 13687 | 16766 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig00034 | 6103 | 6912 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00034 | 6103 | 6912 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
MinION_barcode19
Resfinder
## [1] "No antimicrobial resitance genes from Resfinder database were found"CARD
## [1] "No antimicrobial resitance genes from CARD database were found"ARG-ANNOT
## [1] "No antimicrobial resitance genes from ARG-ANNOT database were found"barcode20_genome
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 2369863 | 2370672 | blaOXA-57_1 | 0/0 | 100 | 100 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_1 | 2394061 | 2395260 | amrA | 0/0 | 100 | 100 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig_1 | 2395277 | 2398408 | amrB | 0/0 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig_2 | 640501 | 641622 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 100 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig_2 | 1482902 | 1485981 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig_2 | 2369863 | 2370672 | OXA-57 | 0/0 | 100 | 100 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_2 | 2369863 | 2370672 | (Bla)blaOXA-57 | 0/0 | 100 | 100 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
barcode21_genome
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_35 | 90382 | 91200 | blaOXA-57_1 | 10/13 | 100 | 97 | AJ631966 | blaOXA-57 | NA |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_3 | 49406 | 50606 | amrA | 1/1 | 100 | 99 | BX571965.1:2152165-2150965 | amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | aminoglycoside |
| contig_3 | 46257 | 49389 | amrB | 1/1 | 100 | 100 | BX571965.1:2150949-2147817 | amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. | aminoglycoside |
| contig_2 | 209322 | 210443 | Burkholderia_pseudomallei_Omp38 | 0/0 | 100 | 99 | AY312416:0-1122 | Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig_33 | 10821 | 13900 | ceoB | 0/0 | 100 | 92 | U97042:1263-4347 | ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump | aminoglycoside, fluoroquinolone |
| contig_35 | 90382 | 91200 | OXA-57 | 10/13 | 100 | 97 | AJ631966:0-810 | OXA-57 is a beta-lactamase found in Burkholderia pseudomallei | cephalosporin, penam |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig_35 | 90382 | 91200 | (Bla)blaOXA-57 | 10/13 | 100 | 97 | AJ631966:1-810 | (Bla)blaOXA-57 | NA |
Summary figures
Presence/Absence of antimicrobial resistance genes (coverage and identity > 90%) on each sample.
Select the database:
Resfinder
CARD
ARG-ANNOT
Virulence genes
The search of virulence genes was performed by screening the genome against Virulence Factors Data Base (VFDB, L. Chen et al., 2005) by using Abricate. Any hit with coverage and/or identity below 90% was removed. If you would like to inspect hits with coverage and/or identity below 90%, please go to the corresponing TORMES output directory.
| Field | Description |
|---|---|
| Contig | Contig name where the virulence gene was found |
| Start | Start position of the virulence gene within the contig |
| End | End position of the virulence gene within the contig |
| Gene | Virulence gene |
| Gaps | Gaps in subject (genome) and query (virulence gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the virulence gene |
| Product | Virulence gene product |
Select the sample
113
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00112 | 1078 | 1359 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00112 | 1356 | 1919 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00214 | 4846 | 5361 | bicA | 0/0 | 100 | 100 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00112 | 5416 | 5871 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00176 | 598 | 2109 | bimA | 1/39 | 97 | 97 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig00214 | 2965 | 4827 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00214 | 1664 | 2923 | bipC | 0/0 | 100 | 100 | YP_111537 | (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00214 | 290 | 1222 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00112 | 3726 | 5264 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00112 | 11101 | 12510 | bopC | 0/0 | 100 | 100 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00112 | 2315 | 3100 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00214 | 1284 | 1574 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00112 | 6107 | 6778 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00112 | 7016 | 7459 | bprD | 0/0 | 100 | 100 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00217 | 7592 | 8572 | bprP | 1/9 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00001 | 36949 | 37647 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00189 | 10596 | 10898 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00189 | 10267 | 10536 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00189 | 8984 | 10270 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00189 | 7832 | 8473 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00189 | 5941 | 7818 | bsaO | 1/15 | 100 | 99 | YP_111551 | (bsaO) Type III secretion system protein BsaO [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00189 | 4823 | 5944 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00189 | 2715 | 4787 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00189 | 2296 | 2703 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00189 | 992 | 2299 | bsaS | 0/0 | 100 | 100 | YP_111547 | (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00189 | 531 | 995 | bsaT | 0/0 | 100 | 100 | YP_111546 | (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00214 | 8475 | 9446 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00214 | 7515 | 7769 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00214 | 6726 | 7481 | bsaY | 0/0 | 100 | 100 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00214 | 5487 | 6722 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00041 | 1945 | 2565 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00073 | 13674 | 14282 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00041 | 5967 | 6671 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00073 | 14595 | 15287 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00040 | 29519 | 30223 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00063 | 21098 | 22840 | cdpA | 0/0 | 100 | 100 | YP_107884 | (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243] |
| contig00012 | 16213 | 17199 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig00115 | 13368 | 14471 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00115 | 14468 | 15172 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00115 | 15169 | 16116 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00115 | 18182 | 18709 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00115 | 12624 | 13052 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00088 | 557 | 937 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00115 | 11894 | 12622 | cheZ | 0/0 | 100 | 100 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00143 | 1 | 723 | flgA | 0/0 | 95 | 100 | YP_106896 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00280 | 4375 | 4866 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00280 | 3866 | 4291 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00280 | 2970 | 3812 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00280 | 1701 | 2942 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00280 | 913 | 1674 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00280 | 91 | 879 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00026 | 61 | 783 | flgH | 0/0 | 100 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00026 | 789 | 1982 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00026 | 1983 | 2918 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00026 | 4098 | 6101 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00026 | 6117 | 7349 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00143 | 827 | 1171 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00143 | 1251 | 1691 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00115 | 5176 | 7278 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00115 | 7275 | 8492 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00115 | 3428 | 5179 | flhF | 0/0 | 100 | 100 | YP_109889 | (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00115 | 2623 | 3435 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00115 | 1867 | 2598 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00088 | 11170 | 12336 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00088 | 12486 | 14006 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00233 | 6186 | 6527 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00233 | 4142 | 5938 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00233 | 3157 | 4152 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00233 | 2490 | 3164 | fliH | 1/6 | 99 | 99 | YP_106856 | (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00233 | 916 | 2496 | fliI | 1/9 | 100 | 99 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00233 | 458 | 910 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00057 | 26759 | 27301 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00057 | 25738 | 26736 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00057 | 25248 | 25745 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00057 | 24586 | 25080 | fliO | 0/0 | 100 | 100 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00057 | 23754 | 24515 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00057 | 23456 | 23728 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00057 | 22555 | 23337 | fliR | 0/0 | 100 | 100 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00233 | 6649 | 7083 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00001 | 21358 | 21951 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 2453 | 3880 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00088 | 2007 | 2867 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00088 | 968 | 1990 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00430 | 593 | 1180 | orgA | 0/0 | 100 | 99 | YP_111557 | (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00130 | 7330 | 7848 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00028 | 37712 | 38971 | pilB | 0/0 | 100 | 99 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00028 | 36498 | 37715 | pilC | 0/0 | 100 | 100 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00028 | 35539 | 36468 | pilD | 0/0 | 100 | 100 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00373 | 1793 | 2377 | pilL | 1/15 | 100 | 97 | YP_111609 | (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00084 | 22411 | 22890 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00374 | 1355 | 2653 | pilO | 0/0 | 100 | 100 | YP_111607 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00476 | 39 | 537 | pilP | 0/0 | 99 | 96 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00084 | 24583 | 26112 | pilQ | 0/0 | 95 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00084 | 23517 | 24593 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00084 | 22930 | 23484 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00373 | 370 | 1476 | pilT | 0/0 | 100 | 100 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00084 | 20729 | 22402 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00049 | 3961 | 4572 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00049 | 5314 | 6033 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00214 | 7805 | 8485 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00265 | 4374 | 5438 | tagB-5 | 0/0 | 100 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00265 | 3622 | 4377 | tagC-5 | 1/3 | 100 | 99 | YP_111513 | (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00265 | 3201 | 3593 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00115 | 16120 | 18141 | tsr | 0/0 | 100 | 100 | YP_109900 | (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00121 | 13382 | 13876 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00121 | 11859 | 13358 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00121 | 11130 | 11639 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00121 | 10676 | 11137 | tssE-5 | 0/0 | 100 | 99 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00121 | 8897 | 10639 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00121 | 7887 | 8909 | tssG-5 | 0/0 | 100 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00121 | 4932 | 7900 | tssH-5/clpV | 1/9 | 97 | 99 | YP_111509 | (tssH-5/clpV) Clp-type ATPase chaperone protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00121 | 1704 | 4727 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00265 | 2394 | 3071 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00265 | 964 | 2361 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00265 | 302 | 949 | tssL-5 | 0/0 | 100 | 100 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00112 | 16619 | 20363 | tssM-5 | 10/81 | 93 | 97 | YP_111518 | (tssM-5) icmF-like protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00001 | 4279 | 6294 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 6295 | 7446 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 7626 | 8789 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 9270 | 10418 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 11893 | 13416 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 13439 | 14761 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 14771 | 15712 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 15709 | 17505 | wcbH | 0/0 | 100 | 99 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 17520 | 18458 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 18455 | 19297 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 19307 | 20320 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 20336 | 21376 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 21953 | 22645 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 22642 | 23211 | wcbN | 0/0 | 100 | 100 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 23478 | 24680 | wcbO | 0/0 | 100 | 100 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 24677 | 25465 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 25467 | 26999 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 27002 | 34642 | wcbR | 0/0 | 100 | 100 | YP_109384 | (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 34639 | 35556 | wcbS | 0/0 | 100 | 100 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 35621 | 36940 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 10425 | 11207 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 11204 | 11860 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
114
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00126 | 974 | 1255 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00126 | 1252 | 1815 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00297 | 4481 | 4996 | bicA | 0/0 | 100 | 100 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00126 | 5312 | 5767 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00181 | 543 | 2054 | bimA | 1/39 | 97 | 97 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig00297 | 5015 | 6877 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00575 | 359 | 1291 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00126 | 3622 | 5160 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00126 | 11008 | 12417 | bopC | 0/0 | 100 | 100 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00126 | 2211 | 2996 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00575 | 1353 | 1643 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00126 | 6003 | 6674 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00126 | 6912 | 7355 | bprD | 0/0 | 100 | 100 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00326 | 1159 | 2139 | bprP | 1/9 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00189 | 8430 | 9128 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00423 | 3012 | 3314 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00423 | 2683 | 2952 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00423 | 1400 | 2686 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00423 | 248 | 889 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00375 | 1049 | 2170 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00375 | 2206 | 4278 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00375 | 4290 | 4697 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00595 | 398 | 862 | bsaT | 0/0 | 100 | 100 | YP_111546 | (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00297 | 396 | 1367 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00297 | 2073 | 2327 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00297 | 2361 | 3116 | bsaY | 0/0 | 100 | 100 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00297 | 3120 | 4355 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00038 | 7304 | 7924 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00089 | 10842 | 11450 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00038 | 11337 | 12041 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00089 | 9837 | 10529 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00113 | 3634 | 4338 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00071 | 1332 | 3074 | cdpA | 0/0 | 100 | 100 | YP_107884 | (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243] |
| contig00162 | 5100 | 6086 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig00128 | 1872 | 2975 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00128 | 1171 | 1875 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00128 | 227 | 1174 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00443 | 1309 | 1836 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00128 | 3291 | 3719 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00037 | 33164 | 33544 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00128 | 3721 | 4449 | cheZ | 0/0 | 100 | 100 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00205 | 10166 | 10858 | flgA | 0/0 | 91 | 100 | YP_106896 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00357 | 4375 | 4866 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00357 | 3866 | 4291 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00357 | 2970 | 3812 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00357 | 1701 | 2942 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00357 | 913 | 1674 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00357 | 91 | 879 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00290 | 6709 | 7387 | flgH | 0/0 | 94 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00290 | 5510 | 6703 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00290 | 4574 | 5509 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00290 | 1391 | 3394 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00290 | 143 | 1375 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00205 | 9718 | 10062 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00205 | 9198 | 9638 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00128 | 9065 | 11167 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00128 | 7851 | 9068 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00128 | 11164 | 12915 | flhF | 0/0 | 100 | 99 | YP_109889 | (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00128 | 12908 | 13720 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00128 | 13745 | 14476 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00037 | 21757 | 22923 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00037 | 20087 | 21607 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00260 | 1660 | 2001 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00260 | 2249 | 4045 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00260 | 4035 | 5030 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00260 | 5023 | 5697 | fliH | 1/6 | 99 | 99 | YP_106856 | (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00260 | 5691 | 7271 | fliI | 1/9 | 100 | 99 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00260 | 7277 | 7729 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 5958 | 6500 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 4937 | 5935 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 4447 | 4944 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 3785 | 4279 | fliO | 0/0 | 100 | 100 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 2953 | 3714 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 2655 | 2927 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 1754 | 2536 | fliR | 0/0 | 100 | 100 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00260 | 1104 | 1538 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00054 | 21282 | 21875 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 2377 | 3804 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00037 | 31234 | 32094 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00037 | 32111 | 33133 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00639 | 230 | 817 | orgA | 0/0 | 100 | 95 | YP_111557 | (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00116 | 7213 | 7731 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00016 | 10318 | 11577 | pilB | 0/0 | 100 | 99 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00016 | 11574 | 12791 | pilC | 0/0 | 100 | 100 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00016 | 12821 | 13750 | pilD | 0/0 | 100 | 100 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00502 | 1772 | 2356 | pilL | 1/15 | 100 | 97 | YP_111609 | (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00300 | 2762 | 3241 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00510 | 146 | 1444 | pilO | 0/0 | 100 | 99 | YP_111607 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00300 | 4934 | 6544 | pilQ | 0/0 | 100 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00300 | 3868 | 4944 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00300 | 3281 | 3835 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00502 | 349 | 1455 | pilT | 0/0 | 100 | 100 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00300 | 1080 | 2753 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00004 | 4408 | 5019 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00004 | 5761 | 6480 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00297 | 1357 | 2037 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00550 | 88 | 1152 | tagB-5 | 0/0 | 100 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00435 | 3150 | 3542 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00443 | 1877 | 3724 | tsr | 0/0 | 91 | 100 | YP_109900 | (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00199 | 5711 | 6205 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00199 | 4188 | 5687 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00199 | 3459 | 3968 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00199 | 3005 | 3466 | tssE-5 | 0/0 | 100 | 99 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00199 | 1226 | 2968 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00199 | 216 | 1238 | tssG-5 | 0/0 | 100 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00281 | 1700 | 4723 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00435 | 2343 | 3020 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00435 | 913 | 2310 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00435 | 251 | 898 | tssL-5 | 0/0 | 100 | 100 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00054 | 4203 | 6218 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 6219 | 7370 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 7550 | 8713 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 9194 | 10342 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 11817 | 13340 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 13363 | 14685 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 14695 | 15636 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 15633 | 17429 | wcbH | 0/0 | 100 | 99 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 17444 | 18382 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 18379 | 19221 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 19231 | 20244 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 20260 | 21300 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 21877 | 22569 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 22566 | 23135 | wcbN | 0/0 | 100 | 100 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 23402 | 24604 | wcbO | 0/0 | 100 | 100 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 24601 | 25389 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 25391 | 26923 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00189 | 6120 | 7037 | wcbS | 0/0 | 100 | 100 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00189 | 7102 | 8421 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 10349 | 11131 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00054 | 11128 | 11784 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
115
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00260 | 972 | 1253 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00260 | 1250 | 1813 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00324 | 2107 | 2622 | bicA | 0/0 | 100 | 100 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00260 | 5310 | 5765 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00054 | 10537 | 12048 | bimA | 1/39 | 97 | 97 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig00324 | 226 | 2088 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00692 | 534 | 1466 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00260 | 3620 | 5158 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00220 | 2419 | 3828 | bopC | 0/0 | 100 | 100 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00260 | 2209 | 2994 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00692 | 182 | 472 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00260 | 6001 | 6672 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00260 | 6910 | 7353 | bprD | 0/0 | 100 | 100 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00141 | 1144 | 2124 | bprP | 1/9 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00002 | 42637 | 43335 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00483 | 706 | 1008 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00483 | 1068 | 1337 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00483 | 1334 | 2620 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00483 | 3130 | 3771 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00410 | 2887 | 4008 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00410 | 779 | 2851 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00410 | 360 | 767 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00324 | 5736 | 6707 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00324 | 4776 | 5030 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00324 | 3987 | 4742 | bsaY | 0/0 | 100 | 99 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00324 | 2748 | 3983 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00029 | 6293 | 6913 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00180 | 10867 | 11475 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00029 | 10293 | 10997 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00180 | 9862 | 10554 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00098 | 13534 | 14238 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00051 | 21057 | 22799 | cdpA | 0/0 | 100 | 100 | YP_107884 | (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243] |
| contig00146 | 5090 | 6076 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig00177 | 8752 | 9855 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 9852 | 10556 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 10553 | 11500 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00500 | 1340 | 1867 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 8008 | 8436 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00035 | 442 | 822 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 7278 | 8006 | cheZ | 0/0 | 100 | 99 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 487 | 978 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 1062 | 1487 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 1541 | 2383 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 2411 | 3652 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 3679 | 4440 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 4474 | 5262 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 5283 | 6005 | flgH | 0/0 | 100 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 6011 | 7204 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 7205 | 8140 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 9320 | 11323 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00119 | 11339 | 12571 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00163 | 778 | 1122 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00163 | 1202 | 1642 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 605 | 2707 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 2704 | 3921 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00435 | 2620 | 3432 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00435 | 1864 | 2595 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00035 | 10912 | 12078 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00035 | 12228 | 13748 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00421 | 3219 | 3560 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00421 | 1175 | 2971 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00421 | 190 | 1185 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00556 | 687 | 2267 | fliI | 1/9 | 100 | 99 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00556 | 2273 | 2725 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00224 | 7580 | 8122 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00224 | 8145 | 9143 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00224 | 9136 | 9633 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00583 | 99 | 593 | fliO | 0/0 | 100 | 100 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00583 | 664 | 1425 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00583 | 1451 | 1723 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00583 | 1842 | 2624 | fliR | 0/0 | 100 | 100 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00421 | 3682 | 4116 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00002 | 27052 | 27645 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 8146 | 9573 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00035 | 1892 | 2752 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00035 | 853 | 1875 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00068 | 16526 | 17044 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00010 | 37602 | 38861 | pilB | 0/0 | 100 | 99 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00010 | 36388 | 37605 | pilC | 0/0 | 100 | 100 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00010 | 35429 | 36358 | pilD | 0/0 | 100 | 100 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00386 | 1848 | 2327 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00549 | 1324 | 2622 | pilO | 0/0 | 100 | 100 | YP_111607 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00549 | 2633 | 3136 | pilP | 0/0 | 100 | 99 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00386 | 4020 | 5585 | pilQ | 0/0 | 97 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00386 | 2954 | 4030 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00386 | 2367 | 2921 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00670 | 299 | 1405 | pilT | 0/0 | 100 | 100 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00386 | 166 | 1839 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00100 | 16591 | 17202 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00100 | 15130 | 15849 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00324 | 5066 | 5746 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00638 | 1099 | 2163 | tagB-5 | 0/0 | 100 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00488 | 322 | 714 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00054 | 17458 | 17952 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00054 | 17976 | 19475 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00054 | 19695 | 20204 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00054 | 20197 | 20658 | tssE-5 | 0/0 | 100 | 99 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00054 | 20695 | 22437 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00054 | 22425 | 23447 | tssG-5 | 0/0 | 100 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00353 | 1708 | 4731 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00488 | 844 | 1521 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00488 | 1554 | 2951 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00488 | 2966 | 3613 | tssL-5 | 0/0 | 100 | 100 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00002 | 9972 | 11987 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 11988 | 13139 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 13320 | 14483 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 14964 | 16112 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 17587 | 19110 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 19133 | 20455 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 20465 | 21406 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 21403 | 23199 | wcbH | 0/0 | 100 | 99 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 23214 | 24152 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 24149 | 24991 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 25001 | 26014 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 26030 | 27070 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 27647 | 28339 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 28336 | 28905 | wcbN | 0/0 | 100 | 99 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 29172 | 30374 | wcbO | 0/0 | 100 | 100 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 30371 | 31159 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 31161 | 32693 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 32696 | 40330 | wcbR | 1/6 | 100 | 100 | YP_109384 | (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 40327 | 41244 | wcbS | 0/0 | 100 | 99 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 41309 | 42628 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 16119 | 16901 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 16898 | 17554 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
116
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00302 | 6096 | 6377 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00302 | 5536 | 6099 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00313 | 2110 | 2625 | bicA | 0/0 | 100 | 100 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00302 | 1584 | 2039 | bicP | 0/0 | 100 | 96 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00349 | 602 | 2113 | bimA | 1/39 | 97 | 97 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig00313 | 229 | 2091 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00693 | 326 | 1258 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00302 | 2191 | 3729 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00234 | 5411 | 6820 | bopC | 0/0 | 100 | 100 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00302 | 4355 | 5140 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00693 | 1320 | 1610 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00302 | 677 | 1348 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00302 | 1 | 439 | bprD | 0/0 | 99 | 100 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00010 | 8430 | 9128 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00492 | 706 | 1008 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00492 | 1068 | 1337 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00492 | 1334 | 2620 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00492 | 3130 | 3771 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00420 | 1080 | 2201 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00420 | 2237 | 4309 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00420 | 4321 | 4728 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00313 | 5739 | 6710 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00313 | 4779 | 5033 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00313 | 3990 | 4745 | bsaY | 0/0 | 100 | 100 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00313 | 2751 | 3986 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00028 | 6291 | 6911 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00609 | 177 | 785 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00028 | 10357 | 11061 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00609 | 1098 | 1790 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00281 | 3639 | 4343 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00058 | 1327 | 3069 | cdpA | 0/0 | 100 | 100 | YP_107884 | (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243] |
| contig00135 | 7534 | 8520 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig00175 | 1846 | 2949 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00175 | 1145 | 1849 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00175 | 201 | 1148 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00504 | 1807 | 2334 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00175 | 3265 | 3693 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00210 | 9345 | 9725 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00175 | 3695 | 4423 | cheZ | 0/0 | 100 | 100 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00367 | 4403 | 4894 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00367 | 3894 | 4319 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00367 | 2998 | 3840 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00367 | 1729 | 2970 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00367 | 941 | 1702 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00367 | 119 | 907 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00012 | 42895 | 43566 | flgH | 0/0 | 93 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00012 | 41696 | 42889 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00012 | 40760 | 41695 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00012 | 37577 | 39580 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00012 | 36329 | 37561 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00193 | 9602 | 9946 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00193 | 9082 | 9522 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00175 | 8994 | 11096 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00175 | 7780 | 8997 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00449 | 1150 | 1962 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00449 | 1987 | 2718 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00121 | 13172 | 14338 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00121 | 11502 | 13022 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00439 | 1151 | 1492 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00439 | 1741 | 3537 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00439 | 3527 | 4522 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00540 | 684 | 2264 | fliI | 1/9 | 100 | 99 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00540 | 2270 | 2722 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00627 | 149 | 691 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00627 | 714 | 1712 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00627 | 1705 | 2202 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00589 | 2121 | 2615 | fliO | 0/0 | 100 | 100 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00589 | 1289 | 2050 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00589 | 991 | 1263 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00589 | 90 | 872 | fliR | 0/0 | 100 | 100 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00439 | 584 | 1018 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00043 | 21338 | 21931 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 2433 | 3860 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00210 | 7415 | 8275 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00210 | 8292 | 9314 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00097 | 10058 | 10576 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00009 | 37692 | 38951 | pilB | 0/0 | 100 | 99 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00009 | 36478 | 37695 | pilC | 0/0 | 100 | 100 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00009 | 35519 | 36448 | pilD | 0/0 | 100 | 100 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00341 | 3259 | 3738 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00831 | 591 | 1094 | pilP | 0/0 | 100 | 99 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00341 | 1 | 1566 | pilQ | 0/0 | 97 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00341 | 1556 | 2632 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00341 | 2665 | 3219 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00674 | 547 | 1653 | pilT | 0/0 | 100 | 100 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00341 | 3747 | 5420 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00018 | 3941 | 4552 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00018 | 5294 | 6013 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00313 | 5069 | 5749 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00664 | 1103 | 2108 | tagB-5 | 0/0 | 94 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00487 | 3142 | 3534 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00181 | 5700 | 6194 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00181 | 4177 | 5676 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00181 | 3448 | 3957 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00181 | 2994 | 3455 | tssE-5 | 0/0 | 100 | 99 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00181 | 1215 | 2957 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00181 | 205 | 1227 | tssG-5 | 0/0 | 100 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00336 | 1699 | 4722 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00487 | 2335 | 3012 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00487 | 905 | 2302 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00487 | 243 | 890 | tssL-5 | 0/0 | 100 | 100 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00043 | 4259 | 6274 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 6275 | 7426 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 7606 | 8769 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 9250 | 10398 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 11873 | 13396 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 13419 | 14741 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 14751 | 15692 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 15689 | 17485 | wcbH | 0/0 | 100 | 99 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 17500 | 18438 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 18435 | 19277 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 19287 | 20300 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 20316 | 21356 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 21933 | 22625 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 22622 | 23191 | wcbN | 0/0 | 100 | 99 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 23458 | 24660 | wcbO | 0/0 | 100 | 99 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 24657 | 25445 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 25447 | 26979 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00010 | 6120 | 7037 | wcbS | 0/0 | 100 | 100 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00010 | 7102 | 8421 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 10405 | 11187 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00043 | 11184 | 11840 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
117
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00284 | 6178 | 6459 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00284 | 5618 | 6181 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00262 | 4444 | 4959 | bicA | 0/0 | 100 | 100 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00284 | 1666 | 2121 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00079 | 11619 | 13130 | bimA | 1/39 | 97 | 97 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig00262 | 4978 | 6840 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00262 | 6882 | 8141 | bipC | 0/0 | 100 | 100 | YP_111537 | (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00527 | 401 | 1333 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00284 | 2273 | 3811 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00226 | 2400 | 3809 | bopC | 0/0 | 100 | 100 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00284 | 4437 | 5222 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00527 | 1395 | 1685 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00284 | 759 | 1430 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00284 | 78 | 521 | bprD | 0/0 | 100 | 99 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00206 | 2580 | 3560 | bprP | 1/9 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00001 | 92155 | 92853 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00419 | 718 | 1020 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00419 | 1080 | 1349 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00419 | 1346 | 2632 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00419 | 3142 | 3783 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00304 | 4768 | 5889 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00304 | 2660 | 4732 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00304 | 2241 | 2648 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00304 | 937 | 2244 | bsaS | 0/0 | 100 | 100 | YP_111547 | (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00304 | 476 | 940 | bsaT | 0/0 | 100 | 100 | YP_111546 | (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00262 | 359 | 1330 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00262 | 2036 | 2290 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00262 | 2324 | 3079 | bsaY | 0/0 | 100 | 99 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00262 | 3083 | 4318 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00046 | 7340 | 7960 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00062 | 9910 | 10518 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00046 | 11340 | 12044 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00062 | 10831 | 11523 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00110 | 5502 | 6206 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00070 | 16420 | 17406 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig00141 | 13323 | 14426 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00141 | 14423 | 15127 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00141 | 15124 | 16071 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00426 | 1344 | 1871 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00141 | 12579 | 13007 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00069 | 478 | 858 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00141 | 11849 | 12577 | cheZ | 0/0 | 100 | 99 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00145 | 1 | 703 | flgA | 0/0 | 92 | 100 | YP_106896 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 1142 | 1633 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 1717 | 2142 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 2196 | 3038 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 3066 | 4307 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 4334 | 5095 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 5129 | 5917 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 5938 | 6660 | flgH | 0/0 | 100 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 6666 | 7859 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 7860 | 8795 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 9975 | 11978 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00010 | 11994 | 13226 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00145 | 807 | 1151 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00145 | 1231 | 1671 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00141 | 5176 | 7278 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00141 | 7275 | 8492 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00141 | 3428 | 5179 | flhF | 0/0 | 100 | 100 | YP_109889 | (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00141 | 2623 | 3435 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00141 | 1867 | 2598 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00069 | 10948 | 12114 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00069 | 12264 | 13784 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00369 | 1368 | 1709 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00369 | 1957 | 3753 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00369 | 3743 | 4738 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00443 | 711 | 2291 | fliI | 1/9 | 100 | 99 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00443 | 2297 | 2749 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 4343 | 4885 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 3322 | 4320 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 2832 | 3329 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 2170 | 2664 | fliO | 0/0 | 100 | 100 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 1338 | 2099 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 1040 | 1312 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00177 | 139 | 921 | fliR | 0/0 | 100 | 100 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00369 | 812 | 1246 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00001 | 76570 | 77163 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 57664 | 59091 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00069 | 1928 | 2788 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00069 | 889 | 1911 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00206 | 236 | 823 | orgA | 0/0 | 100 | 98 | YP_111557 | (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00206 | 792 | 1586 | orgB | 1/12 | 100 | 98 | YP_111558 | (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00060 | 16561 | 17079 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00020 | 10318 | 11577 | pilB | 0/0 | 100 | 99 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00020 | 11574 | 12791 | pilC | 0/0 | 100 | 100 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00020 | 12821 | 13750 | pilD | 0/0 | 100 | 100 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00466 | 1724 | 2308 | pilL | 1/15 | 100 | 97 | YP_111609 | (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00345 | 3259 | 3738 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00587 | 580 | 1083 | pilP | 0/0 | 100 | 98 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00345 | 1 | 1566 | pilQ | 0/0 | 97 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00345 | 1556 | 2632 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00345 | 2665 | 3219 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00466 | 301 | 1407 | pilT | 0/0 | 100 | 100 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00345 | 3747 | 5420 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00098 | 16577 | 17188 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00098 | 15116 | 15835 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00262 | 1320 | 2000 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00490 | 307 | 1371 | tagB-5 | 0/0 | 100 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00420 | 3155 | 3547 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00079 | 5715 | 6209 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00079 | 4192 | 5691 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00079 | 3463 | 3972 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00079 | 3009 | 3470 | tssE-5 | 0/0 | 100 | 99 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00079 | 1230 | 2972 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00079 | 220 | 1242 | tssG-5 | 0/0 | 100 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00318 | 1715 | 4738 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00420 | 2348 | 3025 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00420 | 918 | 2315 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00420 | 256 | 903 | tssL-5 | 0/0 | 100 | 100 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00001 | 59490 | 61505 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 61506 | 62657 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 62838 | 64001 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 64482 | 65630 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 67105 | 68628 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 68651 | 69973 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 69983 | 70924 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 70921 | 72717 | wcbH | 0/0 | 100 | 99 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 72732 | 73670 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 73667 | 74509 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 74519 | 75532 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 75548 | 76588 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 77165 | 77857 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 77854 | 78423 | wcbN | 0/0 | 100 | 99 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 78690 | 79892 | wcbO | 0/0 | 100 | 100 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 79889 | 80677 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 80679 | 82211 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 82214 | 89848 | wcbR | 1/6 | 100 | 100 | YP_109384 | (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 89845 | 90762 | wcbS | 0/0 | 100 | 99 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 90827 | 92146 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 65637 | 66419 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 66416 | 67072 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
118
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00104 | 980 | 1261 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00104 | 1258 | 1821 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00199 | 5763 | 6278 | bicA | 0/0 | 100 | 100 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00104 | 5318 | 5773 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00049 | 10547 | 12142 | bimA | 1/45 | 100 | 97 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig00199 | 3882 | 5744 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00199 | 2581 | 3840 | bipC | 0/0 | 100 | 100 | YP_111537 | (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00199 | 1101 | 2033 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00104 | 3628 | 5166 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00104 | 10875 | 12284 | bopC | 0/0 | 100 | 100 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00104 | 2217 | 3002 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00199 | 2095 | 2385 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00104 | 6009 | 6680 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00104 | 6918 | 7361 | bprD | 0/0 | 100 | 100 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00261 | 4226 | 5206 | bprP | 1/9 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00001 | 96813 | 97511 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00405 | 728 | 1030 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00405 | 1090 | 1359 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00405 | 1356 | 2642 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00405 | 3153 | 3794 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00285 | 1076 | 2197 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00285 | 2233 | 4305 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00285 | 4317 | 4724 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00285 | 4721 | 6028 | bsaS | 0/0 | 100 | 100 | YP_111547 | (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00285 | 6025 | 6489 | bsaT | 0/0 | 100 | 100 | YP_111546 | (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00199 | 9392 | 10363 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00199 | 8432 | 8686 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00199 | 7643 | 8398 | bsaY | 0/0 | 100 | 100 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00199 | 6404 | 7639 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00032 | 1946 | 2566 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00052 | 15315 | 15923 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00032 | 5946 | 6650 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00052 | 16236 | 16928 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00122 | 3629 | 4333 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00031 | 5092 | 6078 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig00023 | 5578 | 6681 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00023 | 4877 | 5581 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00023 | 3933 | 4880 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00023 | 1340 | 1867 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00023 | 6997 | 7425 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00072 | 469 | 849 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00023 | 7427 | 8155 | cheZ | 0/0 | 100 | 100 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00198 | 1 | 712 | flgA | 0/0 | 93 | 100 | YP_106896 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00323 | 1059 | 1550 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00323 | 1634 | 2059 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00323 | 2113 | 2955 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00323 | 2983 | 4224 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00323 | 4251 | 5012 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00323 | 5046 | 5834 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 118 | 796 | flgH | 0/0 | 94 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 802 | 1995 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 1996 | 2931 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 4111 | 6114 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 6130 | 7362 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00198 | 816 | 1160 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00198 | 1240 | 1680 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00023 | 12780 | 14882 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00023 | 11566 | 12783 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00023 | 14879 | 16630 | flhF | 0/0 | 100 | 100 | YP_109889 | (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00023 | 16623 | 17435 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00023 | 17460 | 18191 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00072 | 10940 | 12106 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00072 | 12256 | 13776 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00257 | 6187 | 6528 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00257 | 4142 | 5938 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00257 | 3157 | 4152 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00257 | 2484 | 3164 | fliH | 0/0 | 100 | 100 | YP_106856 | (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00257 | 910 | 2490 | fliI | 1/9 | 100 | 99 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00257 | 452 | 904 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 7594 | 8136 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 8159 | 9157 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 9150 | 9647 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 9815 | 10309 | fliO | 0/0 | 100 | 100 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 10380 | 11141 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 11167 | 11439 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00155 | 11558 | 12340 | fliR | 0/0 | 100 | 100 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00257 | 6661 | 7095 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00001 | 81228 | 81821 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 62322 | 63749 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00072 | 1919 | 2779 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00072 | 880 | 1902 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00261 | 6954 | 7541 | orgA | 0/0 | 100 | 99 | YP_111557 | (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00261 | 6200 | 6985 | orgB | 2/21 | 99 | 97 | YP_111558 | (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00061 | 19660 | 20178 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00022 | 10310 | 11569 | pilB | 0/0 | 100 | 100 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00022 | 11566 | 12783 | pilC | 0/0 | 100 | 100 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00022 | 12813 | 13742 | pilD | 0/0 | 100 | 100 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00447 | 440 | 1024 | pilL | 1/15 | 100 | 97 | YP_111609 | (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00341 | 3259 | 3738 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00448 | 178 | 1476 | pilO | 0/0 | 100 | 100 | YP_111607 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00602 | 84 | 560 | pilP | 0/0 | 95 | 97 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00341 | 1 | 1566 | pilQ | 0/0 | 97 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00341 | 1556 | 2632 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00341 | 2665 | 3219 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00447 | 1341 | 2447 | pilT | 0/0 | 100 | 100 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00341 | 3747 | 5420 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00269 | 3943 | 4554 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00269 | 5296 | 6015 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00199 | 8722 | 9402 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00049 | 29605 | 32238 | tagAB-5 | 1/9 | 100 | 99 | YP_111511 | (tagAB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00049 | 32256 | 33320 | tagB-5 | 0/0 | 100 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00402 | 453 | 845 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00023 | 1908 | 3929 | tsr | 0/0 | 100 | 100 | YP_109900 | (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00049 | 17506 | 18000 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00049 | 18024 | 19523 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00049 | 19743 | 20252 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00049 | 20245 | 20706 | tssE-5 | 0/0 | 100 | 100 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00049 | 20743 | 22485 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00049 | 22473 | 23495 | tssG-5 | 0/0 | 100 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00049 | 23482 | 26515 | tssH-5/clpV | 0/0 | 100 | 99 | YP_111509 | (tssH-5/clpV) Clp-type ATPase chaperone protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00049 | 26556 | 29579 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00402 | 975 | 1652 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00402 | 1685 | 3082 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00402 | 3097 | 3744 | tssL-5 | 0/0 | 100 | 99 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00104 | 16377 | 20082 | tssM-5 | 3/63 | 92 | 97 | YP_111518 | (tssM-5) icmF-like protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00001 | 64148 | 66163 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 66164 | 67315 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 67496 | 68659 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 69140 | 70288 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 71763 | 73286 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 73309 | 74631 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 74641 | 75582 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 75579 | 77375 | wcbH | 0/0 | 100 | 100 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 77390 | 78328 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 78325 | 79167 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 79177 | 80190 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 80206 | 81246 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 81823 | 82515 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 82512 | 83081 | wcbN | 0/0 | 100 | 99 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 83348 | 84550 | wcbO | 0/0 | 100 | 100 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 84547 | 85335 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 85337 | 86869 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 86872 | 94506 | wcbR | 1/6 | 100 | 100 | YP_109384 | (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 94503 | 95420 | wcbS | 0/0 | 100 | 99 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 95485 | 96804 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 70295 | 71077 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 71074 | 71730 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
119
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00119 | 1000 | 1281 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00119 | 1278 | 1841 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00275 | 3301 | 3816 | bicA | 0/0 | 100 | 100 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00119 | 5338 | 5793 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00173 | 10471 | 11982 | bimA | 1/39 | 97 | 97 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig00275 | 1420 | 3282 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00275 | 119 | 1378 | bipC | 0/0 | 100 | 100 | YP_111537 | (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00630 | 290 | 1222 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00119 | 3648 | 5186 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00119 | 10985 | 12394 | bopC | 0/0 | 100 | 100 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00119 | 2237 | 3022 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00630 | 1284 | 1574 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00119 | 6029 | 6700 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00119 | 6938 | 7381 | bprD | 0/0 | 100 | 99 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00249 | 804 | 1784 | bprP | 1/9 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00001 | 42655 | 43353 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00475 | 693 | 995 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00475 | 1055 | 1324 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00475 | 1321 | 2607 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00475 | 3117 | 3758 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00326 | 4739 | 5860 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00326 | 2631 | 4703 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00326 | 2212 | 2619 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00326 | 908 | 2215 | bsaS | 0/0 | 100 | 100 | YP_111547 | (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00326 | 447 | 911 | bsaT | 0/0 | 100 | 100 | YP_111546 | (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00275 | 6930 | 7901 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00275 | 5970 | 6224 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00275 | 5181 | 5936 | bsaY | 0/0 | 100 | 99 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00275 | 3942 | 5177 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00362 | 1970 | 2590 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00172 | 10335 | 10943 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00080 | 330 | 1034 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00172 | 11256 | 11948 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00110 | 13535 | 14239 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00068 | 20990 | 22732 | cdpA | 0/0 | 100 | 100 | YP_107884 | (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243] |
| contig00145 | 5650 | 6636 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig00184 | 1848 | 2951 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00184 | 1147 | 1851 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00184 | 203 | 1150 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00485 | 1340 | 1867 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00184 | 3267 | 3695 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00064 | 557 | 937 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00184 | 3697 | 4425 | cheZ | 0/0 | 100 | 99 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00105 | 5891 | 6655 | flgA | 0/0 | 100 | 100 | YP_106896 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00105 | 4375 | 4866 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00105 | 3866 | 4291 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00105 | 2970 | 3812 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00105 | 1701 | 2942 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00105 | 913 | 1674 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00105 | 91 | 879 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00020 | 1 | 679 | flgH | 0/0 | 94 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00020 | 685 | 1878 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00020 | 1879 | 2814 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00020 | 3994 | 5997 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00020 | 6013 | 7245 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00105 | 6759 | 7103 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00105 | 7183 | 7623 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00184 | 8996 | 11098 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00184 | 7782 | 8999 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00429 | 2623 | 3435 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00429 | 1867 | 2598 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00064 | 11027 | 12193 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00064 | 12343 | 13863 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00412 | 3195 | 3536 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00412 | 1151 | 2947 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00412 | 166 | 1161 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00516 | 908 | 2488 | fliI | 1/9 | 100 | 99 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00516 | 450 | 902 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00159 | 7258 | 7800 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00159 | 7823 | 8821 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00159 | 8814 | 9311 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00159 | 9479 | 9973 | fliO | 0/0 | 100 | 100 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00159 | 10044 | 10805 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00159 | 10831 | 11103 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00159 | 11222 | 12004 | fliR | 0/0 | 100 | 100 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00412 | 3658 | 4092 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00001 | 27070 | 27663 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 8164 | 9591 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00064 | 2007 | 2867 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00064 | 968 | 1990 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00046 | 18163 | 18681 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00011 | 37602 | 38861 | pilB | 0/0 | 100 | 99 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00011 | 36388 | 37605 | pilC | 0/0 | 100 | 100 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00011 | 35429 | 36358 | pilD | 0/0 | 100 | 100 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00544 | 427 | 1011 | pilL | 1/15 | 100 | 97 | YP_111609 | (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00375 | 1841 | 2320 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00541 | 1299 | 2597 | pilO | 0/0 | 100 | 100 | YP_111607 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00800 | 55 | 554 | pilP | 0/0 | 99 | 95 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00375 | 4013 | 5576 | pilQ | 0/0 | 97 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00375 | 2947 | 4023 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00375 | 2360 | 2914 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00544 | 1328 | 2434 | pilT | 0/0 | 100 | 100 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00375 | 159 | 1832 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00307 | 3911 | 4522 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00307 | 5264 | 5983 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00275 | 6260 | 6940 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00342 | 1098 | 2162 | tagB-5 | 0/0 | 100 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00342 | 2159 | 2914 | tagC-5 | 1/3 | 100 | 99 | YP_111513 | (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00342 | 2943 | 3335 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00201 | 5033 | 5527 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00201 | 5551 | 7050 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00201 | 7270 | 7779 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00201 | 7772 | 8233 | tssE-5 | 0/0 | 100 | 99 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00201 | 8270 | 10012 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00201 | 10000 | 10932 | tssG-5 | 0/0 | 91 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00413 | 132 | 3155 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00342 | 3465 | 4142 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00342 | 4175 | 5572 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00342 | 5587 | 6234 | tssL-5 | 0/0 | 100 | 100 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00001 | 9990 | 12005 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 12006 | 13157 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 13338 | 14501 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 14982 | 16130 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 17605 | 19128 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 19151 | 20473 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 20483 | 21424 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 21421 | 23217 | wcbH | 0/0 | 100 | 99 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 23232 | 24170 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 24167 | 25009 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 25019 | 26032 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 26048 | 27088 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 27665 | 28357 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 28354 | 28923 | wcbN | 0/0 | 100 | 99 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 29190 | 30392 | wcbO | 0/0 | 100 | 100 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 30389 | 31177 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 31179 | 32711 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 32714 | 40348 | wcbR | 1/6 | 100 | 100 | YP_109384 | (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 40345 | 41262 | wcbS | 0/0 | 100 | 99 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 41327 | 42646 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 16137 | 16919 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 16916 | 17572 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
120
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00237 | 7388 | 7669 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00237 | 6828 | 7391 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 2127 | 2642 | bicA | 0/0 | 100 | 99 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00237 | 2875 | 3330 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00167 | 10499 | 12079 | bimA | 1/30 | 100 | 98 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig00290 | 246 | 2108 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00492 | 532 | 1464 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00237 | 3483 | 5021 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00209 | 2374 | 3783 | bopC | 0/0 | 100 | 99 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00237 | 5647 | 6432 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00492 | 180 | 470 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00237 | 1968 | 2639 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00237 | 1287 | 1730 | bprD | 0/0 | 100 | 100 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00212 | 7554 | 8534 | bprP | 1/9 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00005 | 38850 | 39548 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00416 | 704 | 1006 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00416 | 1066 | 1335 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00416 | 1332 | 2618 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00416 | 3129 | 3770 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00363 | 2887 | 4008 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00363 | 779 | 2851 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00363 | 360 | 767 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00534 | 969 | 1433 | bsaT | 0/0 | 100 | 100 | YP_111546 | (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 5757 | 6728 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 4796 | 5050 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 4007 | 4762 | bsaY | 0/0 | 100 | 99 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 2768 | 4003 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00051 | 7262 | 7882 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00059 | 15907 | 16515 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00051 | 11273 | 11977 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00059 | 14902 | 15594 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00045 | 21168 | 21872 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00079 | 21044 | 22786 | cdpA | 0/0 | 100 | 99 | YP_107884 | (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243] |
| contig00147 | 5816 | 6802 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig00019 | 5560 | 6663 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00019 | 4859 | 5563 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00019 | 3915 | 4862 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00019 | 1340 | 1867 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00019 | 6979 | 7407 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00470 | 2179 | 2559 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00019 | 7409 | 8137 | cheZ | 0/0 | 100 | 100 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00130 | 15216 | 15938 | flgA | 0/0 | 95 | 100 | YP_106896 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 1033 | 1524 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 1608 | 2033 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 2087 | 2929 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 2957 | 4198 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 4225 | 4986 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 5020 | 5808 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 5829 | 6551 | flgH | 0/0 | 100 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 6557 | 7750 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 7751 | 8686 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 9866 | 11869 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00013 | 11885 | 13117 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00130 | 14768 | 15112 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00130 | 14248 | 14688 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00019 | 12762 | 14864 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00019 | 11548 | 12765 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00019 | 14861 | 16612 | flhF | 0/0 | 100 | 99 | YP_109889 | (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00019 | 16605 | 17417 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00019 | 17442 | 18173 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00094 | 13183 | 14349 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00094 | 11513 | 13033 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00373 | 3228 | 3569 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00373 | 1184 | 2980 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00373 | 199 | 1194 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00459 | 907 | 2505 | fliI | 1/27 | 100 | 98 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00459 | 449 | 901 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00150 | 7559 | 8101 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00150 | 8124 | 9122 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00150 | 9115 | 9612 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00150 | 9780 | 10274 | fliO | 0/0 | 100 | 99 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00150 | 10345 | 11106 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00150 | 11132 | 11404 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00150 | 11523 | 12305 | fliR | 0/0 | 100 | 99 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00373 | 3691 | 4125 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00005 | 54540 | 55133 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 72612 | 74039 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00470 | 249 | 1109 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00470 | 1126 | 2148 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00572 | 231 | 818 | orgA | 0/0 | 100 | 98 | YP_111557 | (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00041 | 26090 | 26608 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00091 | 10310 | 11569 | pilB | 0/0 | 100 | 99 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00091 | 11566 | 12783 | pilC | 0/0 | 100 | 99 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00091 | 12813 | 13751 | pilD | 1/9 | 100 | 99 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00336 | 3257 | 3736 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00610 | 569 | 1072 | pilP | 0/0 | 100 | 100 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00336 | 1 | 1564 | pilQ | 0/0 | 97 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00336 | 1554 | 2630 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00336 | 2663 | 3217 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00525 | 547 | 1653 | pilT | 0/0 | 100 | 99 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00336 | 3745 | 5418 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00100 | 16568 | 17179 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00100 | 15108 | 15827 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00290 | 5087 | 5767 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00510 | 83 | 1147 | tagB-5 | 0/0 | 100 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00417 | 348 | 740 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00019 | 1908 | 3911 | tsr | 1/18 | 99 | 99 | YP_109900 | (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00187 | 5047 | 5541 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00187 | 5565 | 7064 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00187 | 7284 | 7793 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00187 | 7786 | 8247 | tssE-5 | 0/0 | 100 | 100 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00187 | 8284 | 10026 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00187 | 10014 | 10943 | tssG-5 | 0/0 | 91 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00306 | 1718 | 4741 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00417 | 870 | 1547 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00417 | 1580 | 2977 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00417 | 2992 | 3639 | tssL-5 | 0/0 | 100 | 99 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00005 | 70198 | 72213 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 69046 | 70197 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 67702 | 68865 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 66073 | 67221 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 63075 | 64598 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 61730 | 63052 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 60779 | 61720 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 58986 | 60782 | wcbH | 0/0 | 100 | 99 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 58033 | 58971 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 57194 | 58036 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 56171 | 57184 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 55115 | 56155 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 53846 | 54538 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 53280 | 53849 | wcbN | 0/0 | 100 | 99 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 51811 | 53013 | wcbO | 0/0 | 100 | 100 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 51026 | 51814 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 49492 | 51024 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 41855 | 49489 | wcbR | 1/6 | 100 | 100 | YP_109384 | (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 40941 | 41858 | wcbS | 0/0 | 100 | 100 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 39557 | 40876 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 65284 | 66066 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00005 | 64631 | 65287 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
121
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00252 | 1043 | 1324 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00252 | 1321 | 1884 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00303 | 4528 | 5043 | bicA | 0/0 | 100 | 99 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00252 | 5382 | 5837 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00175 | 577 | 2157 | bimA | 1/30 | 100 | 98 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig00303 | 5062 | 6924 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00453 | 1568 | 2500 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00252 | 3691 | 5229 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00221 | 2375 | 3784 | bopC | 0/0 | 100 | 99 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00252 | 2280 | 3065 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00453 | 1216 | 1506 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00252 | 6073 | 6744 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00252 | 6982 | 7425 | bprD | 0/0 | 100 | 100 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00224 | 1195 | 2175 | bprP | 1/9 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00001 | 65681 | 66379 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00440 | 705 | 1007 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00440 | 1067 | 1336 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00440 | 1333 | 2619 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00440 | 3130 | 3771 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00314 | 1042 | 2163 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00314 | 2199 | 4271 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00314 | 4283 | 4690 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00314 | 4687 | 5994 | bsaS | 0/0 | 100 | 100 | YP_111547 | (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00314 | 5991 | 6455 | bsaT | 0/0 | 100 | 100 | YP_111546 | (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00303 | 442 | 1413 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00303 | 2120 | 2374 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00303 | 2408 | 3163 | bsaY | 0/0 | 100 | 99 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00303 | 3167 | 4402 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00042 | 7252 | 7872 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00131 | 245 | 853 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00042 | 11263 | 11967 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00131 | 1166 | 1858 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00118 | 13670 | 14374 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00005 | 9274 | 10260 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig00021 | 1858 | 2961 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 1157 | 1861 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 213 | 1160 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00444 | 1340 | 1867 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 3277 | 3705 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00486 | 2179 | 2559 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 3707 | 4435 | cheZ | 0/0 | 100 | 100 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 11787 | 12278 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 11278 | 11703 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 10382 | 11224 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 9113 | 10354 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 8325 | 9086 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 7503 | 8291 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 6760 | 7482 | flgH | 0/0 | 100 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 5561 | 6754 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 4625 | 5560 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 1442 | 3445 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00166 | 194 | 1426 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00182 | 11208 | 11552 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00182 | 10688 | 11128 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 9060 | 11162 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 7846 | 9063 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 11159 | 12910 | flhF | 0/0 | 100 | 100 | YP_109889 | (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 12903 | 13715 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00021 | 13740 | 14471 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00004 | 72446 | 73612 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00004 | 70776 | 72296 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00386 | 1333 | 1674 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00386 | 1922 | 3718 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00386 | 3708 | 4703 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00477 | 657 | 2255 | fliI | 1/27 | 100 | 98 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00477 | 2261 | 2713 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00180 | 7564 | 8106 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00180 | 8129 | 9127 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00180 | 9120 | 9617 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00180 | 9785 | 10279 | fliO | 0/0 | 100 | 99 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00180 | 10350 | 11111 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00180 | 11137 | 11409 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00180 | 11528 | 12310 | fliR | 0/0 | 100 | 99 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00386 | 777 | 1211 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00001 | 81371 | 81964 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 99443 | 100870 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00486 | 249 | 1109 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00486 | 1126 | 2148 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00607 | 385 | 972 | orgA | 0/0 | 100 | 99 | YP_111557 | (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00122 | 7260 | 7778 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00086 | 10306 | 11565 | pilB | 0/0 | 100 | 99 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00086 | 11562 | 12779 | pilC | 0/0 | 100 | 99 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00086 | 12809 | 13747 | pilD | 1/9 | 100 | 99 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00494 | 1757 | 2341 | pilL | 1/15 | 100 | 97 | YP_111609 | (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00330 | 3263 | 3742 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00479 | 580 | 1878 | pilO | 0/0 | 100 | 100 | YP_111607 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00479 | 66 | 569 | pilP | 0/0 | 100 | 100 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00330 | 1 | 1570 | pilQ | 0/0 | 97 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00330 | 1560 | 2636 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00330 | 2669 | 3223 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00494 | 334 | 1440 | pilT | 0/0 | 100 | 99 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00330 | 3751 | 5424 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00097 | 16534 | 17145 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00097 | 15074 | 15793 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00303 | 1403 | 2083 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00513 | 387 | 1451 | tagB-5 | 0/0 | 100 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00437 | 394 | 786 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00194 | 5700 | 6194 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00194 | 4177 | 5676 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00194 | 3448 | 3957 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00194 | 2994 | 3455 | tssE-5 | 0/0 | 100 | 100 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00194 | 1215 | 2957 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00194 | 205 | 1227 | tssG-5 | 0/0 | 100 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00286 | 1724 | 4747 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00437 | 916 | 1593 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00437 | 1626 | 3023 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00437 | 3038 | 3685 | tssL-5 | 0/0 | 100 | 99 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00001 | 97029 | 99044 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 95877 | 97028 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 94533 | 95696 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 92904 | 94052 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 89906 | 91429 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 88561 | 89883 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 87610 | 88551 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 85817 | 87613 | wcbH | 0/0 | 100 | 99 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 84864 | 85802 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 84025 | 84867 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 83002 | 84015 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 81946 | 82986 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 80677 | 81369 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 80111 | 80680 | wcbN | 0/0 | 100 | 99 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 78642 | 79844 | wcbO | 0/0 | 100 | 100 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 77857 | 78645 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 76323 | 77855 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 68686 | 76320 | wcbR | 1/6 | 100 | 100 | YP_109384 | (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 67772 | 68689 | wcbS | 0/0 | 100 | 100 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 66388 | 67707 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 92115 | 92897 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00001 | 91462 | 92118 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
122
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00290 | 1076 | 1357 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 1354 | 1917 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00306 | 4467 | 4982 | bicA | 0/0 | 100 | 100 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 5414 | 5869 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00349 | 3966 | 5516 | bimA | 0/0 | 100 | 99 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig00306 | 5001 | 6863 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00548 | 269 | 1201 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 3724 | 5262 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00182 | 7832 | 9241 | bopC | 0/0 | 100 | 100 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 2313 | 3098 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00548 | 1263 | 1553 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 6105 | 6776 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00290 | 7014 | 7457 | bprD | 0/0 | 100 | 100 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00233 | 7561 | 8541 | bprP | 1/9 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00002 | 38797 | 39495 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00441 | 799 | 1101 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00441 | 1161 | 1430 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00441 | 1427 | 2713 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00441 | 3224 | 3865 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00389 | 2887 | 4008 | bsaP | 1/15 | 100 | 98 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00389 | 779 | 2851 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00389 | 360 | 767 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00306 | 382 | 1353 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00306 | 2059 | 2313 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00306 | 2347 | 3102 | bsaY | 0/0 | 100 | 100 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00306 | 3106 | 4341 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00054 | 25231 | 25851 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00060 | 15947 | 16555 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00054 | 21136 | 21840 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00060 | 14942 | 15634 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00108 | 13553 | 14257 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00012 | 5699 | 6685 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig00183 | 8676 | 9779 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00183 | 9776 | 10480 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00183 | 10477 | 11424 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00460 | 1309 | 1836 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00183 | 7932 | 8360 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00064 | 469 | 849 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00183 | 7202 | 7930 | cheZ | 0/0 | 100 | 100 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00352 | 1146 | 1637 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00352 | 1721 | 2146 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00352 | 2200 | 3042 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00352 | 3070 | 4311 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00352 | 4338 | 5099 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00352 | 5133 | 5921 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00293 | 6748 | 7424 | flgH | 0/0 | 94 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00293 | 5549 | 6742 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00293 | 4613 | 5548 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00293 | 1430 | 3433 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00293 | 182 | 1414 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00174 | 837 | 1181 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00174 | 1261 | 1701 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00183 | 475 | 2577 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00183 | 2574 | 3791 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00196 | 8845 | 9657 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00196 | 8089 | 8820 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00064 | 10939 | 12105 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00064 | 12255 | 13775 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00273 | 6192 | 6533 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00273 | 4148 | 5944 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00273 | 3163 | 4158 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00273 | 2490 | 3170 | fliH | 0/0 | 100 | 100 | YP_106856 | (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00273 | 916 | 2496 | fliI | 1/9 | 100 | 99 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00273 | 458 | 910 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00390 | 4304 | 4846 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00390 | 3283 | 4281 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00390 | 2793 | 3290 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00390 | 2131 | 2625 | fliO | 0/0 | 100 | 99 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00390 | 1299 | 2060 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00390 | 1001 | 1273 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00390 | 100 | 882 | fliR | 0/0 | 100 | 100 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00273 | 6655 | 7089 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00002 | 54493 | 55086 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 72565 | 73992 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00064 | 1919 | 2779 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00064 | 880 | 1902 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00020 | 33276 | 33794 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00030 | 10300 | 11559 | pilB | 0/0 | 100 | 99 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00030 | 11556 | 12773 | pilC | 0/0 | 100 | 99 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00030 | 12803 | 13741 | pilD | 1/9 | 100 | 99 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00545 | 427 | 1011 | pilL | 1/15 | 100 | 97 | YP_111609 | (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00344 | 3854 | 4333 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00549 | 1324 | 2622 | pilO | 0/0 | 100 | 100 | YP_111607 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00344 | 58 | 554 | pilP | 0/0 | 99 | 99 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig00344 | 551 | 2161 | pilQ | 0/0 | 100 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00344 | 2151 | 3227 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00344 | 3260 | 3814 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00545 | 1328 | 2434 | pilT | 0/0 | 100 | 100 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00344 | 4342 | 6015 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig00296 | 2830 | 3441 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00296 | 1369 | 2088 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig00306 | 1343 | 2023 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig00597 | 100 | 1164 | tagB-5 | 0/0 | 100 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00452 | 3140 | 3532 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00460 | 1877 | 3724 | tsr | 0/0 | 91 | 100 | YP_109900 | (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig00195 | 4983 | 5477 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00195 | 5501 | 7000 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00195 | 7220 | 7729 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00195 | 7722 | 8183 | tssE-5 | 0/0 | 100 | 100 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00195 | 8220 | 9962 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00283 | 4780 | 7600 | tssH-5/clpV | 0/0 | 93 | 99 | YP_111509 | (tssH-5/clpV) Clp-type ATPase chaperone protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00283 | 1725 | 4748 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00452 | 2333 | 3010 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00452 | 903 | 2300 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00452 | 241 | 888 | tssL-5 | 0/0 | 100 | 100 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00182 | 1 | 3611 | tssM-5 | 1/9 | 91 | 99 | YP_111518 | (tssM-5) icmF-like protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig00002 | 70151 | 72166 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 68999 | 70150 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 67655 | 68818 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 66026 | 67174 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 63028 | 64551 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 61683 | 63005 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 60732 | 61673 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 58939 | 60735 | wcbH | 0/0 | 100 | 99 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 57986 | 58924 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 57147 | 57989 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 56124 | 57137 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 55068 | 56108 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 53799 | 54491 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 53233 | 53802 | wcbN | 0/0 | 100 | 99 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 51764 | 52966 | wcbO | 0/0 | 100 | 100 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 50979 | 51767 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 49445 | 50977 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 41802 | 49442 | wcbR | 0/0 | 100 | 100 | YP_109384 | (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 40888 | 41805 | wcbS | 0/0 | 100 | 100 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 39504 | 40823 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 65237 | 66019 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig00002 | 64584 | 65240 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
MinION_barcode19
## [1] "No virulence genes from VFDB database were found"barcode20_genome
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_2 | 2991846 | 2994536 | bapA | 3/54 | 100 | 98 | YP_111534 | (bapA) Type III secretion system secreted protein BapA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2994533 | 2994814 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2994811 | 2995374 | bapC | 0/0 | 100 | 100 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2969961 | 2970908 | basJ | 0/0 | 100 | 100 | YP_111556 | (basJ) Type III secretion system protein BsaJ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2986629 | 2987144 | bicA | 0/0 | 100 | 100 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2998871 | 2999326 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3039091 | 3040685 | bimA | 2/46 | 100 | 97 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2987163 | 2989025 | bipB | 0/0 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2989067 | 2990326 | bipC | 0/0 | 100 | 100 | YP_111537 | (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2990812 | 2991744 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2997181 | 2998719 | bopA | 0/0 | 100 | 100 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3004309 | 3005718 | bopC | 0/0 | 100 | 100 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2995770 | 2996555 | bopE | 0/0 | 100 | 100 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2990460 | 2990750 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2999562 | 3000233 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3001297 | 3002358 | bprC | 0/0 | 100 | 100 | YP_111526 | (bprC) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3000471 | 3000914 | bprD | 0/0 | 100 | 100 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2966650 | 2967629 | bprP | 1/8 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3828424 | 3829122 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2970913 | 2971215 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2971275 | 2971544 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2971541 | 2972827 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2973338 | 2973979 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2973993 | 2975870 | bsaO | 1/15 | 100 | 99 | YP_111551 | (bsaO) Type III secretion system protein BsaO [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2975867 | 2976988 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2977024 | 2979096 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2979108 | 2979515 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2979512 | 2980819 | bsaS | 0/0 | 100 | 100 | YP_111547 | (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2980816 | 2981280 | bsaT | 0/0 | 100 | 100 | YP_111546 | (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2981258 | 2982547 | bsaU | 1/12 | 100 | 99 | YP_111545 | (bsaU) Type III secretion system protein BsaU [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2982544 | 2983515 | bsaV | 0/0 | 100 | 100 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2984221 | 2984475 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2984509 | 2985264 | bsaY | 0/0 | 100 | 100 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2985268 | 2986503 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 258823 | 259443 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2942655 | 2943263 | bspI3 | 0/0 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_2 | 262823 | 263527 | bspR2 | 0/0 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2943576 | 2944268 | bspR3 | 0/0 | 100 | 100 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_2 | 1438976 | 1439680 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_1 | 1864514 | 1866256 | cdpA | 0/0 | 100 | 100 | YP_107884 | (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3177371 | 3178357 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig_1 | 285160 | 287448 | cheA | 1/45 | 100 | 98 | YP_109902 | (cheA) chemotaxis two-component sensor kinase CheA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 279788 | 280891 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 280888 | 281592 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 281589 | 282536 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 284602 | 285129 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 279044 | 279472 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 287480 | 287860 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 278314 | 279042 | cheZ | 0/0 | 100 | 100 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 704694 | 705458 | flgA | 0/0 | 100 | 100 | YP_106896 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 706483 | 706974 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 707058 | 707483 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 707537 | 708379 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 708407 | 709648 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 709675 | 710436 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 710470 | 711258 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 711279 | 712001 | flgH | 0/0 | 100 | 99 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 712007 | 713200 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 713201 | 714136 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 715316 | 717319 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 717335 | 718567 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 704246 | 704590 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 703726 | 704166 | flgN | 0/0 | 100 | 100 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 271587 | 273689 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 273686 | 274903 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 269839 | 271590 | flhF | 0/0 | 100 | 100 | YP_109889 | (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 269034 | 269846 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 268278 | 269009 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 297951 | 299117 | fliC | 0/0 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 299267 | 300787 | fliD | 0/0 | 100 | 100 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 666514 | 666855 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 664469 | 666265 | fliF | 0/0 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 663484 | 664479 | fliG | 0/0 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 662811 | 663491 | fliH | 0/0 | 100 | 100 | YP_106856 | (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 661237 | 662817 | fliI | 1/9 | 100 | 99 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 660779 | 661231 | fliJ | 0/0 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 659337 | 660746 | fliK | 0/0 | 100 | 100 | YP_106853 | (fliK) flagellar hook-length control protein FliK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 469468 | 470010 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 470033 | 471031 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 471024 | 471521 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 471689 | 472183 | fliO | 0/0 | 100 | 100 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 472254 | 473015 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 473041 | 473313 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 473432 | 474214 | fliR | 0/0 | 100 | 100 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 666988 | 667422 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3844114 | 3844707 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3862186 | 3863613 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 288930 | 289790 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 287891 | 288913 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2969377 | 2969964 | orgA | 0/0 | 100 | 100 | YP_111557 | (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2968623 | 2969408 | orgB | 2/21 | 99 | 97 | YP_111558 | (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_1 | 1246462 | 1246980 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_1 | 4086679 | 4087938 | pilB | 0/0 | 100 | 100 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_1 | 4087935 | 4089152 | pilC | 0/0 | 100 | 100 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_1 | 4089182 | 4090111 | pilD | 0/0 | 100 | 100 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2897098 | 2897682 | pilL | 1/15 | 100 | 97 | YP_111609 | (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2904575 | 2905054 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2897682 | 2899451 | pilN | 2/6 | 100 | 99 | YP_111608 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2899463 | 2900761 | pilO | 0/0 | 100 | 100 | YP_111607 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2900772 | 2901275 | pilP | 0/0 | 100 | 99 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2901272 | 2902882 | pilQ | 0/0 | 100 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2902872 | 2903948 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2903981 | 2904535 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2895675 | 2896781 | pilT | 0/0 | 100 | 100 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2905063 | 2906736 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_2 | 634444 | 635055 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_2 | 632983 | 633702 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_2 | 2983505 | 2984185 | spaP | 0/0 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3018997 | 3021630 | tagAB-5 | 1/9 | 100 | 99 | YP_111511 | (tagAB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3017915 | 3018979 | tagB-5 | 0/0 | 100 | 100 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3017163 | 3017918 | tagC-5 | 1/3 | 100 | 99 | YP_111513 | (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3016742 | 3017134 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_1 | 282540 | 284561 | tsr | 0/0 | 100 | 100 | YP_109900 | (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3033235 | 3033729 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3031712 | 3033211 | tssC-5 | 0/0 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3030983 | 3031492 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3030529 | 3030990 | tssE-5 | 0/0 | 100 | 100 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3028750 | 3030492 | tssF-5 | 0/0 | 100 | 100 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3027740 | 3028762 | tssG-5 | 0/0 | 100 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3024720 | 3027753 | tssH-5/clpV | 0/0 | 100 | 99 | YP_111509 | (tssH-5/clpV) Clp-type ATPase chaperone protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3021656 | 3024679 | tssI-5 | 0/0 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3015935 | 3016612 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3014505 | 3015902 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3013843 | 3014490 | tssL-5 | 0/0 | 100 | 99 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_2 | 3009811 | 3013831 | tssM-5 | 3/63 | 100 | 98 | YP_111518 | (tssM-5) icmF-like protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3859772 | 3861787 | wcbA | 0/0 | 100 | 100 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3858620 | 3859771 | wcbB | 0/0 | 100 | 100 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3857276 | 3858439 | wcbC | 0/0 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3855647 | 3856795 | wcbD | 0/0 | 100 | 100 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3852649 | 3854172 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3851304 | 3852626 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3850353 | 3851294 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3848560 | 3850356 | wcbH | 0/0 | 100 | 100 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3847607 | 3848545 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3846768 | 3847610 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3845745 | 3846758 | wcbK | 0/0 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3844689 | 3845729 | wcbL | 0/0 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3843420 | 3844112 | wcbM | 0/0 | 100 | 100 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3842854 | 3843423 | wcbN | 0/0 | 100 | 99 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3841385 | 3842587 | wcbO | 0/0 | 100 | 100 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3840600 | 3841388 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3839066 | 3840598 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3831429 | 3839063 | wcbR | 1/6 | 100 | 100 | YP_109384 | (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3830515 | 3831432 | wcbS | 0/0 | 100 | 99 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3829131 | 3830450 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3854858 | 3855640 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3854205 | 3854861 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
barcode21_genome
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig_31 | 89480 | 92175 | bapA | 13/59 | 100 | 97 | YP_111534 | (bapA) Type III secretion system secreted protein BapA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 89202 | 89483 | bapB | 0/0 | 100 | 100 | YP_111533 | (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 88641 | 89205 | bapC | 1/1 | 100 | 99 | YP_111532 | (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 113129 | 114076 | basJ | 0/0 | 100 | 100 | YP_111556 | (basJ) Type III secretion system protein BsaJ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 96877 | 97392 | bicA | 0/0 | 100 | 100 | YP_111539 | (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 84667 | 85122 | bicP | 0/0 | 100 | 99 | YP_111529 | (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 43027 | 44623 | bimA | 2/46 | 100 | 97 | YP_111499 | (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243] |
| contig_31 | 94995 | 96858 | bipB | 1/1 | 100 | 100 | YP_111538 | (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 93693 | 94953 | bipC | 1/1 | 100 | 100 | YP_111537 | (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 92275 | 93207 | bipD | 0/0 | 100 | 100 | YP_111535 | (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 85274 | 86811 | bopA | 2/3 | 100 | 99 | YP_111530 | (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 78208 | 79617 | bopC | 0/0 | 100 | 100 | YP_111522 | (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 87438 | 88239 | bopE | 10/16 | 100 | 97 | YP_111531 | (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 93269 | 93559 | bprA | 0/0 | 100 | 100 | YP_111536 | (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 83760 | 84431 | bprB | 0/0 | 100 | 100 | YP_111528 | (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 81569 | 82630 | bprC | 0/0 | 100 | 100 | YP_111526 | (bprC) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 83079 | 83522 | bprD | 0/0 | 100 | 100 | YP_111527 | (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 116417 | 117397 | bprP | 1/9 | 100 | 99 | YP_111559 | (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_1 | 29353 | 30049 | BPSL2786 | 0/0 | 100 | 100 | YP_109381 | (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_31 | 112822 | 113124 | bsaK | 0/0 | 100 | 100 | YP_111555 | (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 112493 | 112762 | bsaL | 0/0 | 100 | 99 | YP_111554 | (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 111210 | 112496 | bsaM | 0/0 | 100 | 100 | YP_111553 | (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 110057 | 110698 | bsaN | 0/0 | 100 | 100 | YP_111552 | (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 108166 | 110043 | bsaO | 1/15 | 100 | 99 | YP_111551 | (bsaO) Type III secretion system protein BsaO [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 107048 | 108169 | bsaP | 1/15 | 100 | 99 | YP_111550 | (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 104940 | 107012 | bsaQ | 0/0 | 100 | 100 | YP_111549 | (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 104521 | 104928 | bsaR | 0/0 | 100 | 99 | YP_111548 | (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 103217 | 104524 | bsaS | 0/0 | 100 | 100 | YP_111547 | (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 102756 | 103220 | bsaT | 0/0 | 100 | 100 | YP_111546 | (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 101487 | 102778 | bsaU | 3/14 | 100 | 98 | YP_111545 | (bsaU) Type III secretion system protein BsaU [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 100509 | 101490 | bsaV | 2/14 | 100 | 98 | YP_111544 | (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 99547 | 99801 | bsaX | 0/0 | 100 | 100 | YP_111542 | (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 98757 | 99513 | bsaY | 1/1 | 100 | 99 | YP_111541 | (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 97518 | 98753 | bsaZ | 0/0 | 100 | 100 | YP_111540 | (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_19 | 174251 | 174871 | bspI2 | 0/0 | 100 | 100 | YP_111193 | (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_31 | 140668 | 141274 | bspI3 | 1/2 | 100 | 100 | YP_111576 | (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_19 | 170151 | 170857 | bspR2 | 2/2 | 100 | 100 | YP_111189 | (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_31 | 139659 | 140355 | bspR3 | 4/4 | 100 | 99 | YP_111575 | (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_50 | 50432 | 51136 | bspR4 | 0/0 | 100 | 100 | YP_110332 | (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_8 | 15721 | 17463 | cdpA | 0/0 | 100 | 100 | YP_107884 | (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243] |
| contig_83 | 87219 | 88205 | chbp | 0/0 | 100 | 100 | YP_111397 | (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243] |
| contig_54 | 273831 | 276119 | cheA | 1/45 | 100 | 98 | YP_109902 | (cheA) chemotaxis two-component sensor kinase CheA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 280388 | 281491 | cheB | 0/0 | 100 | 100 | YP_109897 | (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 279687 | 280391 | cheD | 0/0 | 100 | 100 | YP_109898 | (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 278743 | 279690 | cheR | 0/0 | 100 | 100 | YP_109899 | (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 276150 | 276677 | cheW | 0/0 | 100 | 100 | YP_109901 | (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 281807 | 282235 | cheY | 0/0 | 100 | 100 | YP_109896 | (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 273419 | 273799 | cheY1 | 0/0 | 100 | 99 | YP_109903 | (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 282237 | 282965 | cheZ | 0/0 | 100 | 100 | YP_109895 | (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 402501 | 403264 | flgA | 1/1 | 100 | 100 | YP_106896 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 400985 | 401476 | flgB | 0/0 | 100 | 100 | YP_106897 | (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 400476 | 400901 | flgC | 0/0 | 100 | 100 | YP_106898 | (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 399581 | 400423 | flgD | 1/9 | 99 | 99 | YP_106899 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 398312 | 399553 | flgE | 0/0 | 100 | 100 | YP_106900 | (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 397524 | 398285 | flgF | 0/0 | 100 | 100 | YP_106901 | (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 396702 | 397490 | flgG | 0/0 | 100 | 100 | YP_106902 | (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 395959 | 396681 | flgH | 0/0 | 100 | 100 | YP_106903 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 394760 | 395953 | flgI | 0/0 | 100 | 100 | YP_106904 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 393824 | 394759 | flgJ | 0/0 | 100 | 100 | YP_106905 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 390641 | 392644 | flgK | 0/0 | 100 | 100 | YP_106907 | (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 389393 | 390625 | flgL | 0/0 | 100 | 100 | YP_106908 | (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 403368 | 403712 | flgM | 0/0 | 100 | 100 | YP_106895 | (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 403792 | 404234 | flgN | 2/2 | 100 | 99 | YP_106894 | (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 287591 | 289693 | flhA | 0/0 | 100 | 100 | YP_109890 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 286377 | 287594 | flhB | 0/0 | 100 | 100 | YP_109891 | (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 289690 | 291441 | flhF | 0/0 | 100 | 100 | YP_109889 | (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 291434 | 292246 | flhG | 0/0 | 100 | 100 | YP_109888 | (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 292271 | 293002 | fliA | 0/0 | 100 | 100 | YP_109887 | (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 262162 | 263329 | fliC | 1/1 | 100 | 100 | YP_109915 | (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 260487 | 262010 | fliD | 3/4 | 100 | 99 | YP_109916 | (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 441096 | 441437 | fliE | 0/0 | 100 | 100 | YP_106859 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 441684 | 443481 | fliF | 3/3 | 100 | 100 | YP_106858 | (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 443471 | 444465 | fliG | 1/1 | 100 | 100 | YP_106857 | (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 444458 | 445137 | fliH | 1/1 | 100 | 100 | YP_106856 | (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 445131 | 446721 | fliI | 2/19 | 100 | 99 | YP_106855 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 446727 | 447178 | fliJ | 1/1 | 100 | 99 | YP_106854 | (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 447211 | 448621 | fliK | 1/1 | 100 | 99 | YP_106853 | (fliK) flagellar hook-length control protein FliK [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 66394 | 66936 | fliL | 0/0 | 100 | 100 | YP_106651 | (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 65373 | 66371 | fliM | 0/0 | 100 | 100 | YP_106652 | (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 64883 | 65380 | fliN | 0/0 | 100 | 100 | YP_106653 | (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 64221 | 64715 | fliO | 0/0 | 100 | 99 | YP_106654 | (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 63389 | 64150 | fliP | 0/0 | 100 | 100 | YP_106655 | (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 63091 | 63363 | fliQ | 0/0 | 100 | 100 | YP_106656 | (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 62190 | 62972 | fliR | 0/0 | 100 | 99 | YP_106657 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_9 | 440540 | 440974 | fliS | 0/0 | 100 | 100 | YP_106860 | (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_1 | 13764 | 14357 | gmhA | 0/0 | 100 | 100 | YP_109390 | (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_65 | 34048 | 35475 | manC | 0/0 | 100 | 100 | YP_109405 | (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_54 | 271489 | 272349 | motA | 0/0 | 100 | 100 | YP_109905 | (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_54 | 272366 | 273388 | motB | 0/0 | 100 | 100 | YP_109904 | (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_31 | 114073 | 114660 | orgA | 0/0 | 100 | 100 | YP_111557 | (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 114629 | 115423 | orgB | 1/12 | 100 | 98 | YP_111558 | (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_19 | 483101 | 483619 | pilA | 0/0 | 100 | 100 | YP_107407 | (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_80 | 37162 | 38420 | pilB | 1/1 | 100 | 99 | YP_109603 | (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_80 | 35948 | 37165 | pilC | 0/0 | 100 | 100 | YP_109604 | (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_80 | 34989 | 35918 | pilD | 0/0 | 100 | 100 | YP_109605 | (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_78 | 38298 | 38882 | pilL | 1/15 | 100 | 97 | YP_111609 | (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig_78 | 45779 | 46258 | pilM | 0/0 | 100 | 100 | YP_111602 | (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig_78 | 38882 | 40653 | pilN | 4/8 | 100 | 99 | YP_111608 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_78 | 40665 | 41963 | pilO | 2/2 | 100 | 99 | YP_111607 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_78 | 41974 | 42479 | pilP | 2/2 | 100 | 99 | YP_111606 | (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243] |
| contig_78 | 42476 | 44086 | pilQ | 0/0 | 100 | 100 | YP_111605 | (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_78 | 44076 | 45152 | pilR | 0/0 | 100 | 100 | YP_111604 | (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_78 | 45185 | 45739 | pilS | 0/0 | 100 | 99 | YP_111603 | (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_78 | 36875 | 37981 | pilT | 0/0 | 100 | 100 | YP_111610 | (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_78 | 46267 | 47940 | pilV | 0/0 | 100 | 100 | YP_111601 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243] |
| contig_2 | 203264 | 203875 | pmlI/bspI1 | 0/0 | 100 | 100 | YP_110894 | (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_2 | 201803 | 202522 | pmlR/bspR1 | 0/0 | 100 | 100 | YP_110896 | (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243] |
| contig_31 | 99837 | 100519 | spaP | 2/2 | 100 | 100 | YP_111543 | (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243] |
| contig_31 | 62094 | 64729 | tagAB-5 | 3/11 | 100 | 99 | YP_111511 | (tagAB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 64747 | 65812 | tagB-5 | 1/1 | 100 | 99 | YP_111512 | (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 65809 | 66565 | tagC-5 | 2/4 | 100 | 99 | YP_111513 | (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 66594 | 66986 | tagD-5 | 0/0 | 100 | 100 | YP_111514 | (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_54 | 276718 | 278739 | tsr | 0/0 | 100 | 100 | YP_109900 | (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243] |
| contig_31 | 50012 | 50506 | tssB-5 | 0/0 | 100 | 100 | YP_111503 | (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 50530 | 52031 | tssC-5 | 2/2 | 100 | 100 | YP_111504 | (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 52251 | 52760 | tssD-5 | 0/0 | 100 | 100 | YP_111505 | (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 52753 | 53214 | tssE-5 | 0/0 | 100 | 100 | YP_111506 | (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 53251 | 54995 | tssF-5 | 4/4 | 100 | 99 | YP_111507 | (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 54983 | 56006 | tssG-5 | 1/1 | 100 | 100 | YP_111508 | (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 55993 | 59011 | tssH-5/clpV | 3/3 | 99 | 99 | YP_111509 | (tssH-5/clpV) Clp-type ATPase chaperone protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 59043 | 62068 | tssI-5 | 2/2 | 100 | 100 | YP_111510 | (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 67116 | 67793 | tssJ-5 | 0/0 | 100 | 100 | YP_111515 | (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 67826 | 69223 | tssK-5 | 0/0 | 100 | 100 | YP_111516 | (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_31 | 69238 | 69885 | tssL-5 | 0/0 | 100 | 100 | YP_111517 | (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243] |
| contig_65 | 35874 | 37889 | wcbA | 5/5 | 100 | 99 | YP_109404 | (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_65 | 37894 | 39050 | wcbB | 6/7 | 100 | 99 | YP_109403 | (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 30 | 1194 | wcbC | 1/1 | 100 | 99 | YP_109402 | (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 1675 | 2824 | wcbD | 1/1 | 100 | 99 | YP_109401 | (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 4299 | 5822 | wcbE | 0/0 | 100 | 100 | YP_109398 | (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 5845 | 7167 | wcbF | 0/0 | 100 | 99 | YP_109397 | (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 7177 | 8118 | wcbG | 0/0 | 100 | 99 | YP_109396 | (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 8115 | 9911 | wcbH | 0/0 | 100 | 99 | YP_109395 | (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 9926 | 10864 | wcbI | 0/0 | 100 | 99 | YP_109394 | (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 10861 | 11703 | wcbJ | 0/0 | 100 | 100 | YP_109393 | (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 11713 | 12727 | wcbK | 1/1 | 100 | 100 | YP_109392 | (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 12743 | 13782 | wcbL | 1/1 | 100 | 100 | YP_109391 | (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 14359 | 15051 | wcbM | 2/2 | 100 | 99 | YP_109389 | (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 15048 | 15618 | wcbN | 1/1 | 100 | 99 | YP_109388 | (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 15886 | 17088 | wcbO | 0/0 | 100 | 99 | YP_109387 | (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 17085 | 17873 | wcbP | 0/0 | 100 | 100 | YP_109386 | (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 17875 | 19407 | wcbQ | 0/0 | 100 | 100 | YP_109385 | (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 19410 | 27050 | wcbR | 2/2 | 100 | 100 | YP_109384 | (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 27047 | 27964 | wcbS | 0/0 | 100 | 100 | YP_109383 | (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 28029 | 29348 | wcbT | 0/0 | 100 | 100 | YP_109382 | (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 2831 | 3613 | wzm | 0/0 | 100 | 100 | YP_109400 | (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
| contig_1 | 3610 | 4266 | wzt2 | 0/0 | 100 | 100 | YP_109399 | (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243] |
Citation
If using TORMES, please cite it as:
Narciso Martin Quijada, David Rodriguez-Lazaro, Jose Maria Eiros, Marta Hernandez (2019). TORMES: an automated pipeline for whole bacterial genome analysis. Bioinformatics, 35(21), 4207–4212, https://doi.org/10.1093/bioinformatics/btz220.
TORMES is a pipeline that relies in many different software and databases that should be cited when using TORMES. The following software and databases were used for this analysis:
- GNU Parallel, O. Tange, 2018
- QUAST, A. Gurevich et al., 2013
- Barrnap, T. Seemann
- Kraken2, Wood et al., 2019
- RDP Classifier, Q. Wang et al., 2007
- mlst, T. Seemann
- ABRicate, T. Seemann
- ResFinder database, E. Zankari et al., 2012
- CARD database, A.G. McArthur et al., 2013
- ARG-ANNOT database, S.K. Gupta et al., 2014
- VFDB database, L. Chen et al., 2005
- Prodigal, Hyatt et al., 2010
- Prokka, T. Seemann, 2014
- Roary, A.J. Page et al., 2015
- R, R Development Core Team,
2008
- ggplot2, H. Wickham, 2009
- ggtree, G. Yu et al., 2016
- knitr, Y. Xie, 2015
- plotly, C. Sievert et al., 2017
- RColorBrewer, E. Neuwirth and R.C. Brewer, 2014
- reshape2, H. Wickham, 2007
- rmarkdown, J.J. Allaire, 2015
- treeio, L-G. Wang et al., 2019