TORMES version 1.3.0


Samples description


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Assembly statistics


Field Description
Sample Name of the sample
Reads Total number of reads after quality filtering
AvgReadLen Average read length after quality filtering
Contigs Number of contigs of the draft genome (>200bp)
GenomeLength Length (bp) of the draft genome
LargestContig Length (bp) of the largest contig in the genome
N50 “Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly” (Miller et al., 2010)
GC GC content (%) of the draft genome
Depth Number of times each nucleotide position in the draft genome has a read that align to that position


* When already assembled genomes are included for TORMES analysis, “NA” will appear for “Reads”, “AvgReadLen” and “Depth” fields.



Select the parameter

Number of contigs
## Warning: `arrange_()` was deprecated in dplyr 0.7.0.
## Please use `arrange()` instead.
## See vignette('programming') for more help

Average number of contigs per sample = 644.0769231

Genome length

Average genome length per sample = 6.6993736^{6} bp

Largest contig length

Average largest contig length per sample = 4.6654377^{5} bp

N50

Average N50 per sample = 3.5941638^{5} bp

GC content

Average GC content per sample = 65.362%

Number of reads
## Warning: Ignoring 13 observations
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

Average number of reads per sample = NaN

Average read length
## Warning: Ignoring 13 observations
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

Average read length per sample = NaN bp

Sequencing depth
## Warning: Ignoring 13 observations
## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

## Warning in structure(if (i %in% npscales()) uniq(d[[i]]) else d[[i]], class = oldClass(x[[i]])): Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
##   Consider 'structure(list(), *)' instead.

Average sequencing depth = NaNX


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Taxonomic identification


Taxonomic identification was performed by using Kraken2 (Wood et al., 2019). Further details can be found in the Kraken2 webpage. Additionally, 16S rRNA genes were extracted from each genome by using Barrnap and used for taxonomic classification by using the RDP Classifier (Wang et al., 2007) at a confidence level of 0.8. Further details can be found in the RDPTools webpage.


Taxonomic identification by using Kraken2

The number between brackets refers to the percentage of reads (when starting TORMES from raw reads) or contigs (when starting TORMES from already assembled genomes) from each sample covered by the clade rooted at this taxon.


Sample Family Genus Species
113 Burkholderiaceae (91.88%) Burkholderia (91.43%) Burkholderia pseudomallei (85.67%)
114 Burkholderiaceae (95.63%) Burkholderia (95.32%) Burkholderia pseudomallei (88.57%)
115 Burkholderiaceae (93.79%) Burkholderia (93.70%) Burkholderia pseudomallei (87.32%)
116 Burkholderiaceae (92.83%) Burkholderia (92.51%) Burkholderia pseudomallei (87.27%)
117 Burkholderiaceae (90.71%) Burkholderia (90.60%) Burkholderia pseudomallei (85.03%)
118 Burkholderiaceae (88.19%) Burkholderia (88.07%) Burkholderia pseudomallei (83.13%)
119 Burkholderiaceae (92.99%) Burkholderia (92.89%) Burkholderia pseudomallei (86.64%)
120 Burkholderiaceae (90.81%) Burkholderia (90.81%) Burkholderia pseudomallei (85.27%)
121 Burkholderiaceae (95.77%) Burkholderia (95.65%) Burkholderia pseudomallei (91.88%)
122 Burkholderiaceae (90.83%) Burkholderia (90.47%) Burkholderia pseudomallei (82.99%)
MinION_barcode19 Enterococcaceae (100.00%) Enterococcus (100.00%) (%)
barcode20_genome Burkholderiaceae (100.00%) Burkholderia (100.00%) Burkholderia pseudomallei (100.00%)
barcode21_genome Burkholderiaceae (85.92%) Burkholderia (85.92%) Burkholderia pseudomallei (80.28%)


Taxonomic identification by using RDP Classifier


Field Description
Sample Name of the sample where the 16S rRNA gene was found. Note that the same sample might harbor more than one 16S rRNA gene copy.
Contig Name of the contig where the 16S rRNA gene was found.
Position Position within the contig where the 16S rRNA gene was found (begin-end). Note that the 16S rRNA genes identified for one sample might not harbor the same length (fragmented, etc.).
Strand Strand of the 16S rRNA gene defined as forward (+) or reverse (-).
Order Taxonomic order that the 16S rRNA gene was assigned over a confidence level of 0.8.
Family Taxonomic family that the 16S rRNA gene was assigned over a confidence level of 0.8.
Genus Taxonomic genus that the 16S rRNA gene was assigned over a confidence level of 0.8.


Sample Contig Position Strand Order Family Genus
113-16S_rRNA contig00300 308-1835 (+) Burkholderiales Burkholderiaceae Burkholderia
114-16S_rRNA contig00364 308-1835 (+) Burkholderiales Burkholderiaceae Burkholderia
115-16S_rRNA contig00389 308-1835 (+) Burkholderiales Burkholderiaceae Burkholderia
116-16S_rRNA contig00395 308-1835 (+) Burkholderiales Burkholderiaceae Burkholderia
117-16S_rRNA contig00350 3601-5128 (-) Burkholderiales Burkholderiaceae Burkholderia
118-16S_rRNA contig00338 308-1835 (+) Burkholderiales Burkholderiaceae Burkholderia
119-16S_rRNA contig00383 332-1859 (+) Burkholderiales Burkholderiaceae Burkholderia
120-16S_rRNA contig00328 443-1970 (+) Burkholderiales Burkholderiaceae Burkholderia
121-16S_rRNA contig00351 443-1970 (+) Burkholderiales Burkholderiaceae Burkholderia
122-16S_rRNA contig00367 308-1835 (+) Burkholderiales Burkholderiaceae Burkholderia
barcode20_genome-16S_rRNA contig_1 1838133-1839660 (+) Burkholderiales Burkholderiaceae Burkholderia
barcode20_genome-16S_rRNA contig_1 3956-5483 (-) Burkholderiales Burkholderiaceae Burkholderia
barcode20_genome-16S_rRNA contig_1 209003-210528 (-) Burkholderiales Burkholderiaceae Burkholderia
barcode20_genome-16S_rRNA contig_2 1391318-1392846 (-) Burkholderiales Burkholderiaceae Burkholderia
barcode21_genome-16S_rRNA contig_20 7412-8939 (-) Burkholderiales Burkholderiaceae Burkholderia
barcode21_genome-16S_rRNA contig_5 3985-5514 (-) Burkholderiales Burkholderiaceae Burkholderia
barcode21_genome-16S_rRNA contig_50 2728-4261 (-) Burkholderiales Burkholderiaceae Burkholderia
barcode21_genome-16S_rRNA contig_37 193745-195278 (+) Burkholderiales Burkholderiaceae Mycetohabitans


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Multi-Locus Sequence Typing (MLST)

Further details can be found in mlst web page.

Symbol Meaning
~ novel full length allele similar to match
? partial match to known allele
- allele missing


Scheme ST 1 2 3 4 5 6 7
113 bpseudomallei - ace(1) gltB(1) gmhD(2) lepA(1) lipA(5) narK(125) ndh(1)
114 bpseudomallei - ace(1) gltB(1) gmhD(2) lepA(1) lipA(5) narK(125) ndh(1)
115 bpseudomallei - ace(1) gltB(1) gmhD(~2) lepA(1) lipA(5) narK(1) ndh(1)
116 bpseudomallei - ace(1) gltB(1) gmhD(2) lepA(1) lipA(5) narK(125) ndh(1)
117 bpseudomallei - ace(1) gltB(1) gmhD(~2) lepA(1) lipA(5) narK(1) ndh(1)
118 bpseudomallei 95 ace(1) gltB(1) gmhD(2) lepA(2) lipA(5) narK(1) ndh(1)
119 bpseudomallei - ace(1) gltB(1) gmhD(~2) lepA(1) lipA(5) narK(1) ndh(1)
120 bpseudomallei - ace(1) gltB(1) gmhD(13) lepA(1) lipA(5) narK(125) ndh(1)
121 bpseudomallei - ace(1) gltB(1) gmhD(13) lepA(1) lipA(5) narK(125) ndh(1)
122 bpseudomallei - ace(1) gltB(1) gmhD(2) lepA(1) lipA(6) narK(1) ndh(1)
barcode20_genome bpseudomallei 95 ace(1) gltB(1) gmhD(2) lepA(2) lipA(5) narK(1) ndh(1)
barcode21_genome bpseudomallei - ace(12) gltB(1) gmhD(2) lepA(2) lipA(5) narK(6) ndh(1)
MinION_barcode19 - -


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Pangenome analysis

Pangenome genes summary

Genes Description Number
Core genes (99% <= strains <= 100%) 0
Soft core genes (95% <= strains < 99%) 0
Shell genes (15% <= strains < 95%) 7424
Cloud genes (0% <= strains < 15%) 2241
Total genes (0% <= strains <= 100%) 9665

Schematic representation of genes presence (color) or absence (blank) between ssamples:


Pangenome tree based on presence/absence of accesory genes representation

Rectangular (phylogram)

Circular (phylogram)

Rectangular (cladogram)

Circular (cladogram)


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Pangenome tree based on core genes alignment representation

Rectangular (phylogram)

Circular (phylogram)

Rectangular (cladogram)

Circular (cladogram)


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Antimicrobial resistance

The search of antimicrobial resistance genes was performed by screening the genome against Resfinder (E. Zankari et al., 2012), CARD (A.G. McArthur et al., 2013) and ARG-ANNOT (S.K. Gupta et al., 2014) databases by using Abricate. Any hit with coverage and/or identity below 90% was removed. If you would like to inspect hits with coverage and/or identity below 90%, please go to the corresponing TORMES output directory.


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antimicrobial resistance gene
Gaps Gaps in subject (genome) and query (antimicrobial resistance gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antimicrobial resistance gene
Product Antimicrobial resistance gene product
Resistance Antimicrobial that the gene confers resistance to


Select the samples and the database

113
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00047 8355 9164 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00294 1147 2346 amrA 0/0 100 100 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig00294 2363 5494 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig00079 163 1284 Burkholderia_pseudomallei_Omp38 0/0 100 99 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00076 13710 16789 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig00047 8355 9164 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00047 8355 9164 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
114
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00031 26818 27627 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00356 1107 2306 amrA 0/0 100 100 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig00356 2323 5454 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig00100 163 1284 Burkholderia_pseudomallei_Omp38 0/0 100 99 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00057 13696 16775 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig00031 26818 27627 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00031 26818 27627 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
115
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00026 26724 27533 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00387 3226 4425 amrA 0/0 100 100 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig00387 78 3209 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig00243 7992 9113 Burkholderia_pseudomallei_Omp38 0/0 100 100 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00042 11219 14298 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig00026 26724 27533 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00026 26724 27533 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
116
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00024 26753 27562 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00387 1072 2271 amrA 0/0 100 100 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig00387 2288 5419 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig00246 7597 8718 Burkholderia_pseudomallei_Omp38 0/0 100 99 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00079 10978 14057 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig00024 26753 27562 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00024 26753 27562 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
117
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00042 28369 29178 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00316 3230 4429 amrA 0/0 100 100 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig00316 82 3213 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig00247 7955 9076 Burkholderia_pseudomallei_Omp38 0/0 100 100 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00058 13670 16749 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig00042 28369 29178 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00042 28369 29178 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
118
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00043 28353 29162 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00342 1148 2347 amrA 0/0 100 100 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig00342 2364 5495 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig00236 7819 8940 Burkholderia_pseudomallei_Omp38 0/0 100 100 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00065 11060 14139 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig00043 28353 29162 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00043 28353 29162 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
119
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00028 28359 29168 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00377 3269 4468 amrA 0/0 100 100 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig00377 121 3252 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig00255 194 1315 Burkholderia_pseudomallei_Omp38 0/0 100 100 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00051 13663 16742 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig00028 28359 29168 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00028 28359 29168 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
120
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 52609 53418 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00340 1170 2369 amrA 0/0 100 100 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig00340 2386 5517 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig00226 141 1262 Burkholderia_pseudomallei_Omp38 0/0 100 100 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00029 13671 16750 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig00001 52609 53418 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00001 52609 53418 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
121
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00039 26730 27539 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00362 1164 2363 amrA 0/0 100 100 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig00362 2380 5511 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig00247 161 1282 Burkholderia_pseudomallei_Omp38 0/0 100 100 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00023 13757 16836 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig00039 26730 27539 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00039 26730 27539 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
122
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 6103 6912 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00332 2201 3400 amrA 0/0 100 99 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig00332 3417 6548 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig00241 7823 8944 Burkholderia_pseudomallei_Omp38 0/0 100 100 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig00090 13687 16766 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig00034 6103 6912 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 6103 6912 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
MinION_barcode19
Resfinder
## [1] "No antimicrobial resitance genes from Resfinder database were found"
CARD
## [1] "No antimicrobial resitance genes from CARD database were found"
ARG-ANNOT
## [1] "No antimicrobial resitance genes from ARG-ANNOT database were found"
barcode20_genome
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 2369863 2370672 blaOXA-57_1 0/0 100 100 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_1 2394061 2395260 amrA 0/0 100 100 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig_1 2395277 2398408 amrB 0/0 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig_2 640501 641622 Burkholderia_pseudomallei_Omp38 0/0 100 100 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig_2 1482902 1485981 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig_2 2369863 2370672 OXA-57 0/0 100 100 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_2 2369863 2370672 (Bla)blaOXA-57 0/0 100 100 AJ631966:1-810 (Bla)blaOXA-57 NA
barcode21_genome
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_35 90382 91200 blaOXA-57_1 10/13 100 97 AJ631966 blaOXA-57 NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_3 49406 50606 amrA 1/1 100 99 BX571965.1:2152165-2150965 amrA is the efflux pump subunit of the AmrAB-OprM multidrug efflux complex. amrA corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. aminoglycoside
contig_3 46257 49389 amrB 1/1 100 100 BX571965.1:2150949-2147817 amrB is the membrane fusion protein of the AmrAB-OprM multidrug efflux complex. aminoglycoside
contig_2 209322 210443 Burkholderia_pseudomallei_Omp38 0/0 100 99 AY312416:0-1122 Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence their antimicrobial susceptibility to penicillin G cefoxitin ceftazidime and imipenem. carbapenem, cephalosporin, cephamycin, monobactam, penam, penem
contig_33 10821 13900 ceoB 0/0 100 92 U97042:1263-4347 ceoB is a cytoplasmic membrane component of the CeoAB-OpcM efflux pump aminoglycoside, fluoroquinolone
contig_35 90382 91200 OXA-57 10/13 100 97 AJ631966:0-810 OXA-57 is a beta-lactamase found in Burkholderia pseudomallei cephalosporin, penam
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig_35 90382 91200 (Bla)blaOXA-57 10/13 100 97 AJ631966:1-810 (Bla)blaOXA-57 NA


Summary figures

Presence/Absence of antimicrobial resistance genes (coverage and identity > 90%) on each sample.


Select the database:
Resfinder
CARD
ARG-ANNOT


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Virulence genes

The search of virulence genes was performed by screening the genome against Virulence Factors Data Base (VFDB, L. Chen et al., 2005) by using Abricate. Any hit with coverage and/or identity below 90% was removed. If you would like to inspect hits with coverage and/or identity below 90%, please go to the corresponing TORMES output directory.


Field Description
Contig Contig name where the virulence gene was found
Start Start position of the virulence gene within the contig
End End position of the virulence gene within the contig
Gene Virulence gene
Gaps Gaps in subject (genome) and query (virulence gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the virulence gene
Product Virulence gene product


Select the sample

113
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00112 1078 1359 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00112 1356 1919 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00214 4846 5361 bicA 0/0 100 100 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00112 5416 5871 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00176 598 2109 bimA 1/39 97 97 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig00214 2965 4827 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00214 1664 2923 bipC 0/0 100 100 YP_111537 (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00214 290 1222 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00112 3726 5264 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00112 11101 12510 bopC 0/0 100 100 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00112 2315 3100 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00214 1284 1574 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00112 6107 6778 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00112 7016 7459 bprD 0/0 100 100 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00217 7592 8572 bprP 1/9 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00001 36949 37647 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00189 10596 10898 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00189 10267 10536 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00189 8984 10270 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00189 7832 8473 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00189 5941 7818 bsaO 1/15 100 99 YP_111551 (bsaO) Type III secretion system protein BsaO [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00189 4823 5944 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00189 2715 4787 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00189 2296 2703 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00189 992 2299 bsaS 0/0 100 100 YP_111547 (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00189 531 995 bsaT 0/0 100 100 YP_111546 (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00214 8475 9446 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00214 7515 7769 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00214 6726 7481 bsaY 0/0 100 100 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00214 5487 6722 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00041 1945 2565 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00073 13674 14282 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00041 5967 6671 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00073 14595 15287 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00040 29519 30223 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00063 21098 22840 cdpA 0/0 100 100 YP_107884 (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243]
contig00012 16213 17199 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig00115 13368 14471 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00115 14468 15172 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00115 15169 16116 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00115 18182 18709 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00115 12624 13052 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00088 557 937 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00115 11894 12622 cheZ 0/0 100 100 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00143 1 723 flgA 0/0 95 100 YP_106896 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00280 4375 4866 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00280 3866 4291 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00280 2970 3812 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00280 1701 2942 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00280 913 1674 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00280 91 879 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00026 61 783 flgH 0/0 100 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00026 789 1982 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00026 1983 2918 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00026 4098 6101 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00026 6117 7349 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00143 827 1171 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00143 1251 1691 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00115 5176 7278 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00115 7275 8492 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00115 3428 5179 flhF 0/0 100 100 YP_109889 (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00115 2623 3435 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00115 1867 2598 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00088 11170 12336 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00088 12486 14006 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00233 6186 6527 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00233 4142 5938 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00233 3157 4152 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00233 2490 3164 fliH 1/6 99 99 YP_106856 (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00233 916 2496 fliI 1/9 100 99 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00233 458 910 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00057 26759 27301 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00057 25738 26736 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00057 25248 25745 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00057 24586 25080 fliO 0/0 100 100 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00057 23754 24515 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00057 23456 23728 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00057 22555 23337 fliR 0/0 100 100 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00233 6649 7083 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00001 21358 21951 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 2453 3880 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00088 2007 2867 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00088 968 1990 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00430 593 1180 orgA 0/0 100 99 YP_111557 (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00130 7330 7848 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00028 37712 38971 pilB 0/0 100 99 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00028 36498 37715 pilC 0/0 100 100 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00028 35539 36468 pilD 0/0 100 100 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00373 1793 2377 pilL 1/15 100 97 YP_111609 (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00084 22411 22890 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00374 1355 2653 pilO 0/0 100 100 YP_111607 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00476 39 537 pilP 0/0 99 96 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00084 24583 26112 pilQ 0/0 95 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00084 23517 24593 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00084 22930 23484 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00373 370 1476 pilT 0/0 100 100 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00084 20729 22402 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00049 3961 4572 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00049 5314 6033 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00214 7805 8485 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00265 4374 5438 tagB-5 0/0 100 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00265 3622 4377 tagC-5 1/3 100 99 YP_111513 (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00265 3201 3593 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00115 16120 18141 tsr 0/0 100 100 YP_109900 (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00121 13382 13876 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00121 11859 13358 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00121 11130 11639 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00121 10676 11137 tssE-5 0/0 100 99 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00121 8897 10639 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00121 7887 8909 tssG-5 0/0 100 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00121 4932 7900 tssH-5/clpV 1/9 97 99 YP_111509 (tssH-5/clpV) Clp-type ATPase chaperone protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00121 1704 4727 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00265 2394 3071 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00265 964 2361 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00265 302 949 tssL-5 0/0 100 100 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00112 16619 20363 tssM-5 10/81 93 97 YP_111518 (tssM-5) icmF-like protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00001 4279 6294 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 6295 7446 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 7626 8789 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 9270 10418 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 11893 13416 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 13439 14761 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 14771 15712 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 15709 17505 wcbH 0/0 100 99 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 17520 18458 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 18455 19297 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 19307 20320 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 20336 21376 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 21953 22645 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 22642 23211 wcbN 0/0 100 100 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 23478 24680 wcbO 0/0 100 100 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 24677 25465 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 25467 26999 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 27002 34642 wcbR 0/0 100 100 YP_109384 (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 34639 35556 wcbS 0/0 100 100 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 35621 36940 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 10425 11207 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 11204 11860 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
114
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00126 974 1255 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00126 1252 1815 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00297 4481 4996 bicA 0/0 100 100 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00126 5312 5767 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00181 543 2054 bimA 1/39 97 97 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig00297 5015 6877 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00575 359 1291 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00126 3622 5160 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00126 11008 12417 bopC 0/0 100 100 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00126 2211 2996 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00575 1353 1643 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00126 6003 6674 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00126 6912 7355 bprD 0/0 100 100 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00326 1159 2139 bprP 1/9 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00189 8430 9128 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00423 3012 3314 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00423 2683 2952 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00423 1400 2686 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00423 248 889 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00375 1049 2170 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00375 2206 4278 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00375 4290 4697 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00595 398 862 bsaT 0/0 100 100 YP_111546 (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00297 396 1367 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00297 2073 2327 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00297 2361 3116 bsaY 0/0 100 100 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00297 3120 4355 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00038 7304 7924 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00089 10842 11450 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00038 11337 12041 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00089 9837 10529 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00113 3634 4338 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00071 1332 3074 cdpA 0/0 100 100 YP_107884 (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243]
contig00162 5100 6086 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig00128 1872 2975 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00128 1171 1875 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00128 227 1174 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00443 1309 1836 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00128 3291 3719 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00037 33164 33544 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00128 3721 4449 cheZ 0/0 100 100 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00205 10166 10858 flgA 0/0 91 100 YP_106896 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00357 4375 4866 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00357 3866 4291 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00357 2970 3812 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00357 1701 2942 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00357 913 1674 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00357 91 879 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00290 6709 7387 flgH 0/0 94 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00290 5510 6703 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00290 4574 5509 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00290 1391 3394 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00290 143 1375 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00205 9718 10062 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00205 9198 9638 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00128 9065 11167 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00128 7851 9068 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00128 11164 12915 flhF 0/0 100 99 YP_109889 (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00128 12908 13720 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00128 13745 14476 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00037 21757 22923 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00037 20087 21607 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00260 1660 2001 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00260 2249 4045 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00260 4035 5030 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00260 5023 5697 fliH 1/6 99 99 YP_106856 (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00260 5691 7271 fliI 1/9 100 99 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00260 7277 7729 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 5958 6500 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 4937 5935 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 4447 4944 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 3785 4279 fliO 0/0 100 100 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 2953 3714 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 2655 2927 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 1754 2536 fliR 0/0 100 100 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00260 1104 1538 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00054 21282 21875 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 2377 3804 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00037 31234 32094 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00037 32111 33133 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00639 230 817 orgA 0/0 100 95 YP_111557 (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00116 7213 7731 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00016 10318 11577 pilB 0/0 100 99 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00016 11574 12791 pilC 0/0 100 100 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00016 12821 13750 pilD 0/0 100 100 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00502 1772 2356 pilL 1/15 100 97 YP_111609 (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00300 2762 3241 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00510 146 1444 pilO 0/0 100 99 YP_111607 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00300 4934 6544 pilQ 0/0 100 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00300 3868 4944 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00300 3281 3835 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00502 349 1455 pilT 0/0 100 100 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00300 1080 2753 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00004 4408 5019 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00004 5761 6480 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00297 1357 2037 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00550 88 1152 tagB-5 0/0 100 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00435 3150 3542 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00443 1877 3724 tsr 0/0 91 100 YP_109900 (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00199 5711 6205 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00199 4188 5687 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00199 3459 3968 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00199 3005 3466 tssE-5 0/0 100 99 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00199 1226 2968 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00199 216 1238 tssG-5 0/0 100 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00281 1700 4723 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00435 2343 3020 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00435 913 2310 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00435 251 898 tssL-5 0/0 100 100 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00054 4203 6218 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 6219 7370 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 7550 8713 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 9194 10342 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 11817 13340 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 13363 14685 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 14695 15636 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 15633 17429 wcbH 0/0 100 99 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 17444 18382 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 18379 19221 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 19231 20244 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 20260 21300 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 21877 22569 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 22566 23135 wcbN 0/0 100 100 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 23402 24604 wcbO 0/0 100 100 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 24601 25389 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 25391 26923 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00189 6120 7037 wcbS 0/0 100 100 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00189 7102 8421 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 10349 11131 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00054 11128 11784 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
115
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00260 972 1253 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00260 1250 1813 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00324 2107 2622 bicA 0/0 100 100 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00260 5310 5765 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00054 10537 12048 bimA 1/39 97 97 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig00324 226 2088 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00692 534 1466 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00260 3620 5158 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00220 2419 3828 bopC 0/0 100 100 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00260 2209 2994 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00692 182 472 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00260 6001 6672 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00260 6910 7353 bprD 0/0 100 100 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00141 1144 2124 bprP 1/9 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00002 42637 43335 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00483 706 1008 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00483 1068 1337 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00483 1334 2620 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00483 3130 3771 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00410 2887 4008 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00410 779 2851 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00410 360 767 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00324 5736 6707 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00324 4776 5030 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00324 3987 4742 bsaY 0/0 100 99 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00324 2748 3983 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00029 6293 6913 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00180 10867 11475 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00029 10293 10997 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00180 9862 10554 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00098 13534 14238 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00051 21057 22799 cdpA 0/0 100 100 YP_107884 (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243]
contig00146 5090 6076 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig00177 8752 9855 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 9852 10556 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 10553 11500 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00500 1340 1867 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 8008 8436 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00035 442 822 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 7278 8006 cheZ 0/0 100 99 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 487 978 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 1062 1487 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 1541 2383 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 2411 3652 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 3679 4440 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 4474 5262 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 5283 6005 flgH 0/0 100 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 6011 7204 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 7205 8140 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 9320 11323 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00119 11339 12571 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00163 778 1122 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00163 1202 1642 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 605 2707 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 2704 3921 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00435 2620 3432 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00435 1864 2595 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00035 10912 12078 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00035 12228 13748 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00421 3219 3560 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00421 1175 2971 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00421 190 1185 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00556 687 2267 fliI 1/9 100 99 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00556 2273 2725 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00224 7580 8122 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00224 8145 9143 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00224 9136 9633 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00583 99 593 fliO 0/0 100 100 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00583 664 1425 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00583 1451 1723 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00583 1842 2624 fliR 0/0 100 100 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00421 3682 4116 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00002 27052 27645 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 8146 9573 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00035 1892 2752 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00035 853 1875 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00068 16526 17044 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00010 37602 38861 pilB 0/0 100 99 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00010 36388 37605 pilC 0/0 100 100 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00010 35429 36358 pilD 0/0 100 100 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00386 1848 2327 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00549 1324 2622 pilO 0/0 100 100 YP_111607 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00549 2633 3136 pilP 0/0 100 99 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00386 4020 5585 pilQ 0/0 97 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00386 2954 4030 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00386 2367 2921 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00670 299 1405 pilT 0/0 100 100 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00386 166 1839 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00100 16591 17202 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00100 15130 15849 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00324 5066 5746 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00638 1099 2163 tagB-5 0/0 100 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00488 322 714 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00054 17458 17952 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00054 17976 19475 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00054 19695 20204 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00054 20197 20658 tssE-5 0/0 100 99 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00054 20695 22437 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00054 22425 23447 tssG-5 0/0 100 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00353 1708 4731 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00488 844 1521 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00488 1554 2951 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00488 2966 3613 tssL-5 0/0 100 100 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00002 9972 11987 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 11988 13139 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 13320 14483 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 14964 16112 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 17587 19110 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 19133 20455 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 20465 21406 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 21403 23199 wcbH 0/0 100 99 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 23214 24152 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 24149 24991 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 25001 26014 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 26030 27070 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 27647 28339 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 28336 28905 wcbN 0/0 100 99 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 29172 30374 wcbO 0/0 100 100 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 30371 31159 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 31161 32693 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 32696 40330 wcbR 1/6 100 100 YP_109384 (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 40327 41244 wcbS 0/0 100 99 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 41309 42628 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 16119 16901 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 16898 17554 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
116
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00302 6096 6377 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00302 5536 6099 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00313 2110 2625 bicA 0/0 100 100 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00302 1584 2039 bicP 0/0 100 96 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00349 602 2113 bimA 1/39 97 97 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig00313 229 2091 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00693 326 1258 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00302 2191 3729 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00234 5411 6820 bopC 0/0 100 100 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00302 4355 5140 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00693 1320 1610 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00302 677 1348 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00302 1 439 bprD 0/0 99 100 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00010 8430 9128 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00492 706 1008 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00492 1068 1337 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00492 1334 2620 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00492 3130 3771 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00420 1080 2201 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00420 2237 4309 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00420 4321 4728 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00313 5739 6710 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00313 4779 5033 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00313 3990 4745 bsaY 0/0 100 100 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00313 2751 3986 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00028 6291 6911 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00609 177 785 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00028 10357 11061 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00609 1098 1790 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00281 3639 4343 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00058 1327 3069 cdpA 0/0 100 100 YP_107884 (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243]
contig00135 7534 8520 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig00175 1846 2949 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00175 1145 1849 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00175 201 1148 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00504 1807 2334 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00175 3265 3693 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00210 9345 9725 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00175 3695 4423 cheZ 0/0 100 100 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00367 4403 4894 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00367 3894 4319 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00367 2998 3840 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00367 1729 2970 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00367 941 1702 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00367 119 907 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00012 42895 43566 flgH 0/0 93 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00012 41696 42889 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00012 40760 41695 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00012 37577 39580 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00012 36329 37561 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00193 9602 9946 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00193 9082 9522 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00175 8994 11096 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00175 7780 8997 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00449 1150 1962 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00449 1987 2718 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00121 13172 14338 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00121 11502 13022 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00439 1151 1492 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00439 1741 3537 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00439 3527 4522 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00540 684 2264 fliI 1/9 100 99 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00540 2270 2722 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00627 149 691 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00627 714 1712 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00627 1705 2202 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00589 2121 2615 fliO 0/0 100 100 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00589 1289 2050 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00589 991 1263 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00589 90 872 fliR 0/0 100 100 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00439 584 1018 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00043 21338 21931 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 2433 3860 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00210 7415 8275 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00210 8292 9314 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00097 10058 10576 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00009 37692 38951 pilB 0/0 100 99 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00009 36478 37695 pilC 0/0 100 100 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00009 35519 36448 pilD 0/0 100 100 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00341 3259 3738 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00831 591 1094 pilP 0/0 100 99 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00341 1 1566 pilQ 0/0 97 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00341 1556 2632 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00341 2665 3219 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00674 547 1653 pilT 0/0 100 100 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00341 3747 5420 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00018 3941 4552 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00018 5294 6013 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00313 5069 5749 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00664 1103 2108 tagB-5 0/0 94 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00487 3142 3534 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00181 5700 6194 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00181 4177 5676 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00181 3448 3957 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00181 2994 3455 tssE-5 0/0 100 99 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00181 1215 2957 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00181 205 1227 tssG-5 0/0 100 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00336 1699 4722 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00487 2335 3012 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00487 905 2302 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00487 243 890 tssL-5 0/0 100 100 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00043 4259 6274 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 6275 7426 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 7606 8769 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 9250 10398 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 11873 13396 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 13419 14741 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 14751 15692 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 15689 17485 wcbH 0/0 100 99 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 17500 18438 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 18435 19277 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 19287 20300 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 20316 21356 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 21933 22625 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 22622 23191 wcbN 0/0 100 99 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 23458 24660 wcbO 0/0 100 99 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 24657 25445 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 25447 26979 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00010 6120 7037 wcbS 0/0 100 100 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00010 7102 8421 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 10405 11187 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00043 11184 11840 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
117
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00284 6178 6459 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00284 5618 6181 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00262 4444 4959 bicA 0/0 100 100 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00284 1666 2121 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00079 11619 13130 bimA 1/39 97 97 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig00262 4978 6840 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00262 6882 8141 bipC 0/0 100 100 YP_111537 (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00527 401 1333 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00284 2273 3811 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00226 2400 3809 bopC 0/0 100 100 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00284 4437 5222 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00527 1395 1685 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00284 759 1430 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00284 78 521 bprD 0/0 100 99 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00206 2580 3560 bprP 1/9 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00001 92155 92853 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00419 718 1020 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00419 1080 1349 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00419 1346 2632 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00419 3142 3783 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00304 4768 5889 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00304 2660 4732 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00304 2241 2648 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00304 937 2244 bsaS 0/0 100 100 YP_111547 (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00304 476 940 bsaT 0/0 100 100 YP_111546 (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00262 359 1330 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00262 2036 2290 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00262 2324 3079 bsaY 0/0 100 99 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00262 3083 4318 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00046 7340 7960 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00062 9910 10518 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00046 11340 12044 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00062 10831 11523 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00110 5502 6206 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00070 16420 17406 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig00141 13323 14426 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00141 14423 15127 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00141 15124 16071 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00426 1344 1871 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00141 12579 13007 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00069 478 858 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00141 11849 12577 cheZ 0/0 100 99 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00145 1 703 flgA 0/0 92 100 YP_106896 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 1142 1633 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 1717 2142 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 2196 3038 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 3066 4307 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 4334 5095 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 5129 5917 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 5938 6660 flgH 0/0 100 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 6666 7859 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 7860 8795 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 9975 11978 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00010 11994 13226 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00145 807 1151 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00145 1231 1671 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00141 5176 7278 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00141 7275 8492 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00141 3428 5179 flhF 0/0 100 100 YP_109889 (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00141 2623 3435 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00141 1867 2598 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00069 10948 12114 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00069 12264 13784 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00369 1368 1709 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00369 1957 3753 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00369 3743 4738 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00443 711 2291 fliI 1/9 100 99 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00443 2297 2749 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 4343 4885 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 3322 4320 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 2832 3329 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 2170 2664 fliO 0/0 100 100 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 1338 2099 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 1040 1312 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00177 139 921 fliR 0/0 100 100 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00369 812 1246 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00001 76570 77163 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 57664 59091 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00069 1928 2788 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00069 889 1911 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00206 236 823 orgA 0/0 100 98 YP_111557 (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00206 792 1586 orgB 1/12 100 98 YP_111558 (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00060 16561 17079 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00020 10318 11577 pilB 0/0 100 99 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00020 11574 12791 pilC 0/0 100 100 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00020 12821 13750 pilD 0/0 100 100 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00466 1724 2308 pilL 1/15 100 97 YP_111609 (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00345 3259 3738 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00587 580 1083 pilP 0/0 100 98 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00345 1 1566 pilQ 0/0 97 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00345 1556 2632 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00345 2665 3219 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00466 301 1407 pilT 0/0 100 100 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00345 3747 5420 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00098 16577 17188 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00098 15116 15835 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00262 1320 2000 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00490 307 1371 tagB-5 0/0 100 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00420 3155 3547 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00079 5715 6209 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00079 4192 5691 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00079 3463 3972 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00079 3009 3470 tssE-5 0/0 100 99 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00079 1230 2972 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00079 220 1242 tssG-5 0/0 100 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00318 1715 4738 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00420 2348 3025 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00420 918 2315 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00420 256 903 tssL-5 0/0 100 100 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00001 59490 61505 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 61506 62657 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 62838 64001 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 64482 65630 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 67105 68628 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 68651 69973 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 69983 70924 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 70921 72717 wcbH 0/0 100 99 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 72732 73670 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 73667 74509 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 74519 75532 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 75548 76588 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 77165 77857 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 77854 78423 wcbN 0/0 100 99 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 78690 79892 wcbO 0/0 100 100 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 79889 80677 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 80679 82211 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 82214 89848 wcbR 1/6 100 100 YP_109384 (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 89845 90762 wcbS 0/0 100 99 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 90827 92146 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 65637 66419 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 66416 67072 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
118
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00104 980 1261 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00104 1258 1821 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00199 5763 6278 bicA 0/0 100 100 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00104 5318 5773 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00049 10547 12142 bimA 1/45 100 97 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig00199 3882 5744 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00199 2581 3840 bipC 0/0 100 100 YP_111537 (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00199 1101 2033 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00104 3628 5166 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00104 10875 12284 bopC 0/0 100 100 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00104 2217 3002 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00199 2095 2385 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00104 6009 6680 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00104 6918 7361 bprD 0/0 100 100 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00261 4226 5206 bprP 1/9 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00001 96813 97511 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00405 728 1030 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00405 1090 1359 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00405 1356 2642 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00405 3153 3794 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00285 1076 2197 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00285 2233 4305 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00285 4317 4724 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00285 4721 6028 bsaS 0/0 100 100 YP_111547 (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00285 6025 6489 bsaT 0/0 100 100 YP_111546 (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00199 9392 10363 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00199 8432 8686 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00199 7643 8398 bsaY 0/0 100 100 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00199 6404 7639 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00032 1946 2566 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00052 15315 15923 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00032 5946 6650 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00052 16236 16928 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00122 3629 4333 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00031 5092 6078 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig00023 5578 6681 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00023 4877 5581 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00023 3933 4880 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00023 1340 1867 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00023 6997 7425 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00072 469 849 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00023 7427 8155 cheZ 0/0 100 100 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00198 1 712 flgA 0/0 93 100 YP_106896 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00323 1059 1550 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00323 1634 2059 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00323 2113 2955 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00323 2983 4224 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00323 4251 5012 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00323 5046 5834 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 118 796 flgH 0/0 94 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 802 1995 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 1996 2931 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 4111 6114 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 6130 7362 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00198 816 1160 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00198 1240 1680 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00023 12780 14882 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00023 11566 12783 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00023 14879 16630 flhF 0/0 100 100 YP_109889 (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00023 16623 17435 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00023 17460 18191 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00072 10940 12106 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00072 12256 13776 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00257 6187 6528 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00257 4142 5938 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00257 3157 4152 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00257 2484 3164 fliH 0/0 100 100 YP_106856 (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00257 910 2490 fliI 1/9 100 99 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00257 452 904 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 7594 8136 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 8159 9157 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 9150 9647 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 9815 10309 fliO 0/0 100 100 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 10380 11141 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 11167 11439 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00155 11558 12340 fliR 0/0 100 100 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00257 6661 7095 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00001 81228 81821 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 62322 63749 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00072 1919 2779 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00072 880 1902 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00261 6954 7541 orgA 0/0 100 99 YP_111557 (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00261 6200 6985 orgB 2/21 99 97 YP_111558 (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00061 19660 20178 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00022 10310 11569 pilB 0/0 100 100 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00022 11566 12783 pilC 0/0 100 100 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00022 12813 13742 pilD 0/0 100 100 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00447 440 1024 pilL 1/15 100 97 YP_111609 (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00341 3259 3738 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00448 178 1476 pilO 0/0 100 100 YP_111607 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00602 84 560 pilP 0/0 95 97 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00341 1 1566 pilQ 0/0 97 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00341 1556 2632 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00341 2665 3219 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00447 1341 2447 pilT 0/0 100 100 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00341 3747 5420 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00269 3943 4554 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00269 5296 6015 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00199 8722 9402 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00049 29605 32238 tagAB-5 1/9 100 99 YP_111511 (tagAB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00049 32256 33320 tagB-5 0/0 100 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00402 453 845 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00023 1908 3929 tsr 0/0 100 100 YP_109900 (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00049 17506 18000 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00049 18024 19523 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00049 19743 20252 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00049 20245 20706 tssE-5 0/0 100 100 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00049 20743 22485 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00049 22473 23495 tssG-5 0/0 100 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00049 23482 26515 tssH-5/clpV 0/0 100 99 YP_111509 (tssH-5/clpV) Clp-type ATPase chaperone protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00049 26556 29579 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00402 975 1652 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00402 1685 3082 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00402 3097 3744 tssL-5 0/0 100 99 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00104 16377 20082 tssM-5 3/63 92 97 YP_111518 (tssM-5) icmF-like protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00001 64148 66163 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 66164 67315 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 67496 68659 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 69140 70288 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 71763 73286 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 73309 74631 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 74641 75582 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 75579 77375 wcbH 0/0 100 100 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 77390 78328 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 78325 79167 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 79177 80190 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 80206 81246 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 81823 82515 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 82512 83081 wcbN 0/0 100 99 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 83348 84550 wcbO 0/0 100 100 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 84547 85335 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 85337 86869 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 86872 94506 wcbR 1/6 100 100 YP_109384 (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 94503 95420 wcbS 0/0 100 99 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 95485 96804 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 70295 71077 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 71074 71730 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
119
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00119 1000 1281 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00119 1278 1841 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00275 3301 3816 bicA 0/0 100 100 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00119 5338 5793 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00173 10471 11982 bimA 1/39 97 97 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig00275 1420 3282 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00275 119 1378 bipC 0/0 100 100 YP_111537 (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00630 290 1222 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00119 3648 5186 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00119 10985 12394 bopC 0/0 100 100 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00119 2237 3022 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00630 1284 1574 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00119 6029 6700 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00119 6938 7381 bprD 0/0 100 99 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00249 804 1784 bprP 1/9 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00001 42655 43353 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00475 693 995 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00475 1055 1324 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00475 1321 2607 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00475 3117 3758 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00326 4739 5860 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00326 2631 4703 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00326 2212 2619 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00326 908 2215 bsaS 0/0 100 100 YP_111547 (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00326 447 911 bsaT 0/0 100 100 YP_111546 (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00275 6930 7901 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00275 5970 6224 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00275 5181 5936 bsaY 0/0 100 99 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00275 3942 5177 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00362 1970 2590 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00172 10335 10943 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00080 330 1034 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00172 11256 11948 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00110 13535 14239 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00068 20990 22732 cdpA 0/0 100 100 YP_107884 (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243]
contig00145 5650 6636 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig00184 1848 2951 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00184 1147 1851 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00184 203 1150 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00485 1340 1867 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00184 3267 3695 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00064 557 937 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00184 3697 4425 cheZ 0/0 100 99 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00105 5891 6655 flgA 0/0 100 100 YP_106896 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00105 4375 4866 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00105 3866 4291 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00105 2970 3812 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00105 1701 2942 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00105 913 1674 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00105 91 879 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00020 1 679 flgH 0/0 94 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00020 685 1878 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00020 1879 2814 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00020 3994 5997 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00020 6013 7245 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00105 6759 7103 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00105 7183 7623 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00184 8996 11098 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00184 7782 8999 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00429 2623 3435 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00429 1867 2598 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00064 11027 12193 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00064 12343 13863 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00412 3195 3536 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00412 1151 2947 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00412 166 1161 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00516 908 2488 fliI 1/9 100 99 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00516 450 902 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00159 7258 7800 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00159 7823 8821 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00159 8814 9311 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00159 9479 9973 fliO 0/0 100 100 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00159 10044 10805 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00159 10831 11103 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00159 11222 12004 fliR 0/0 100 100 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00412 3658 4092 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00001 27070 27663 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 8164 9591 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00064 2007 2867 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00064 968 1990 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00046 18163 18681 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00011 37602 38861 pilB 0/0 100 99 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00011 36388 37605 pilC 0/0 100 100 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00011 35429 36358 pilD 0/0 100 100 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00544 427 1011 pilL 1/15 100 97 YP_111609 (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00375 1841 2320 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00541 1299 2597 pilO 0/0 100 100 YP_111607 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00800 55 554 pilP 0/0 99 95 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00375 4013 5576 pilQ 0/0 97 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00375 2947 4023 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00375 2360 2914 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00544 1328 2434 pilT 0/0 100 100 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00375 159 1832 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00307 3911 4522 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00307 5264 5983 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00275 6260 6940 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00342 1098 2162 tagB-5 0/0 100 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00342 2159 2914 tagC-5 1/3 100 99 YP_111513 (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00342 2943 3335 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00201 5033 5527 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00201 5551 7050 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00201 7270 7779 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00201 7772 8233 tssE-5 0/0 100 99 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00201 8270 10012 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00201 10000 10932 tssG-5 0/0 91 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00413 132 3155 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00342 3465 4142 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00342 4175 5572 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00342 5587 6234 tssL-5 0/0 100 100 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00001 9990 12005 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 12006 13157 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 13338 14501 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 14982 16130 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 17605 19128 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 19151 20473 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 20483 21424 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 21421 23217 wcbH 0/0 100 99 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 23232 24170 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 24167 25009 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 25019 26032 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 26048 27088 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 27665 28357 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 28354 28923 wcbN 0/0 100 99 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 29190 30392 wcbO 0/0 100 100 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 30389 31177 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 31179 32711 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 32714 40348 wcbR 1/6 100 100 YP_109384 (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 40345 41262 wcbS 0/0 100 99 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 41327 42646 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 16137 16919 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 16916 17572 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
120
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00237 7388 7669 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00237 6828 7391 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 2127 2642 bicA 0/0 100 99 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00237 2875 3330 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00167 10499 12079 bimA 1/30 100 98 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig00290 246 2108 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00492 532 1464 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00237 3483 5021 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00209 2374 3783 bopC 0/0 100 99 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00237 5647 6432 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00492 180 470 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00237 1968 2639 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00237 1287 1730 bprD 0/0 100 100 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00212 7554 8534 bprP 1/9 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00005 38850 39548 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00416 704 1006 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00416 1066 1335 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00416 1332 2618 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00416 3129 3770 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00363 2887 4008 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00363 779 2851 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00363 360 767 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00534 969 1433 bsaT 0/0 100 100 YP_111546 (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 5757 6728 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 4796 5050 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 4007 4762 bsaY 0/0 100 99 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 2768 4003 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00051 7262 7882 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00059 15907 16515 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00051 11273 11977 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00059 14902 15594 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00045 21168 21872 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00079 21044 22786 cdpA 0/0 100 99 YP_107884 (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243]
contig00147 5816 6802 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig00019 5560 6663 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00019 4859 5563 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00019 3915 4862 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00019 1340 1867 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00019 6979 7407 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00470 2179 2559 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00019 7409 8137 cheZ 0/0 100 100 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00130 15216 15938 flgA 0/0 95 100 YP_106896 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 1033 1524 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 1608 2033 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 2087 2929 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 2957 4198 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 4225 4986 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 5020 5808 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 5829 6551 flgH 0/0 100 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 6557 7750 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 7751 8686 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 9866 11869 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00013 11885 13117 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00130 14768 15112 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00130 14248 14688 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00019 12762 14864 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00019 11548 12765 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00019 14861 16612 flhF 0/0 100 99 YP_109889 (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00019 16605 17417 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00019 17442 18173 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00094 13183 14349 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00094 11513 13033 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00373 3228 3569 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00373 1184 2980 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00373 199 1194 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00459 907 2505 fliI 1/27 100 98 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00459 449 901 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00150 7559 8101 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00150 8124 9122 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00150 9115 9612 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00150 9780 10274 fliO 0/0 100 99 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00150 10345 11106 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00150 11132 11404 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00150 11523 12305 fliR 0/0 100 99 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00373 3691 4125 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00005 54540 55133 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 72612 74039 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00470 249 1109 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00470 1126 2148 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00572 231 818 orgA 0/0 100 98 YP_111557 (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00041 26090 26608 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00091 10310 11569 pilB 0/0 100 99 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00091 11566 12783 pilC 0/0 100 99 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00091 12813 13751 pilD 1/9 100 99 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00336 3257 3736 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00610 569 1072 pilP 0/0 100 100 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00336 1 1564 pilQ 0/0 97 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00336 1554 2630 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00336 2663 3217 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00525 547 1653 pilT 0/0 100 99 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00336 3745 5418 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00100 16568 17179 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00100 15108 15827 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00290 5087 5767 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00510 83 1147 tagB-5 0/0 100 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00417 348 740 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00019 1908 3911 tsr 1/18 99 99 YP_109900 (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00187 5047 5541 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00187 5565 7064 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00187 7284 7793 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00187 7786 8247 tssE-5 0/0 100 100 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00187 8284 10026 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00187 10014 10943 tssG-5 0/0 91 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00306 1718 4741 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00417 870 1547 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00417 1580 2977 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00417 2992 3639 tssL-5 0/0 100 99 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00005 70198 72213 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 69046 70197 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 67702 68865 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 66073 67221 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 63075 64598 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 61730 63052 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 60779 61720 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 58986 60782 wcbH 0/0 100 99 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 58033 58971 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 57194 58036 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 56171 57184 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 55115 56155 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 53846 54538 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 53280 53849 wcbN 0/0 100 99 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 51811 53013 wcbO 0/0 100 100 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 51026 51814 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 49492 51024 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 41855 49489 wcbR 1/6 100 100 YP_109384 (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 40941 41858 wcbS 0/0 100 100 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 39557 40876 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 65284 66066 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00005 64631 65287 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
121
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00252 1043 1324 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00252 1321 1884 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00303 4528 5043 bicA 0/0 100 99 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00252 5382 5837 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00175 577 2157 bimA 1/30 100 98 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig00303 5062 6924 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00453 1568 2500 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00252 3691 5229 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00221 2375 3784 bopC 0/0 100 99 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00252 2280 3065 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00453 1216 1506 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00252 6073 6744 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00252 6982 7425 bprD 0/0 100 100 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00224 1195 2175 bprP 1/9 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00001 65681 66379 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00440 705 1007 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00440 1067 1336 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00440 1333 2619 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00440 3130 3771 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00314 1042 2163 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00314 2199 4271 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00314 4283 4690 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00314 4687 5994 bsaS 0/0 100 100 YP_111547 (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00314 5991 6455 bsaT 0/0 100 100 YP_111546 (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00303 442 1413 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00303 2120 2374 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00303 2408 3163 bsaY 0/0 100 99 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00303 3167 4402 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00042 7252 7872 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00131 245 853 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00042 11263 11967 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00131 1166 1858 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00118 13670 14374 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00005 9274 10260 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig00021 1858 2961 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 1157 1861 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 213 1160 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00444 1340 1867 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 3277 3705 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00486 2179 2559 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 3707 4435 cheZ 0/0 100 100 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 11787 12278 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 11278 11703 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 10382 11224 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 9113 10354 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 8325 9086 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 7503 8291 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 6760 7482 flgH 0/0 100 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 5561 6754 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 4625 5560 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 1442 3445 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00166 194 1426 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00182 11208 11552 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00182 10688 11128 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 9060 11162 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 7846 9063 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 11159 12910 flhF 0/0 100 100 YP_109889 (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 12903 13715 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00021 13740 14471 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00004 72446 73612 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00004 70776 72296 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00386 1333 1674 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00386 1922 3718 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00386 3708 4703 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00477 657 2255 fliI 1/27 100 98 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00477 2261 2713 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00180 7564 8106 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00180 8129 9127 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00180 9120 9617 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00180 9785 10279 fliO 0/0 100 99 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00180 10350 11111 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00180 11137 11409 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00180 11528 12310 fliR 0/0 100 99 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00386 777 1211 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00001 81371 81964 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 99443 100870 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00486 249 1109 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00486 1126 2148 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00607 385 972 orgA 0/0 100 99 YP_111557 (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00122 7260 7778 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00086 10306 11565 pilB 0/0 100 99 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00086 11562 12779 pilC 0/0 100 99 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00086 12809 13747 pilD 1/9 100 99 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00494 1757 2341 pilL 1/15 100 97 YP_111609 (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00330 3263 3742 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00479 580 1878 pilO 0/0 100 100 YP_111607 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00479 66 569 pilP 0/0 100 100 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00330 1 1570 pilQ 0/0 97 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00330 1560 2636 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00330 2669 3223 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00494 334 1440 pilT 0/0 100 99 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00330 3751 5424 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00097 16534 17145 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00097 15074 15793 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00303 1403 2083 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00513 387 1451 tagB-5 0/0 100 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00437 394 786 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00194 5700 6194 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00194 4177 5676 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00194 3448 3957 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00194 2994 3455 tssE-5 0/0 100 100 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00194 1215 2957 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00194 205 1227 tssG-5 0/0 100 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00286 1724 4747 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00437 916 1593 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00437 1626 3023 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00437 3038 3685 tssL-5 0/0 100 99 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00001 97029 99044 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 95877 97028 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 94533 95696 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 92904 94052 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 89906 91429 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 88561 89883 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 87610 88551 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 85817 87613 wcbH 0/0 100 99 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 84864 85802 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 84025 84867 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 83002 84015 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 81946 82986 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 80677 81369 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 80111 80680 wcbN 0/0 100 99 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 78642 79844 wcbO 0/0 100 100 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 77857 78645 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 76323 77855 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 68686 76320 wcbR 1/6 100 100 YP_109384 (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 67772 68689 wcbS 0/0 100 100 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 66388 67707 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 92115 92897 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00001 91462 92118 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
122
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00290 1076 1357 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 1354 1917 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00306 4467 4982 bicA 0/0 100 100 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 5414 5869 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00349 3966 5516 bimA 0/0 100 99 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig00306 5001 6863 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00548 269 1201 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 3724 5262 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00182 7832 9241 bopC 0/0 100 100 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 2313 3098 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00548 1263 1553 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 6105 6776 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00290 7014 7457 bprD 0/0 100 100 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00233 7561 8541 bprP 1/9 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00002 38797 39495 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00441 799 1101 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00441 1161 1430 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00441 1427 2713 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00441 3224 3865 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00389 2887 4008 bsaP 1/15 100 98 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00389 779 2851 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00389 360 767 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00306 382 1353 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00306 2059 2313 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00306 2347 3102 bsaY 0/0 100 100 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00306 3106 4341 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00054 25231 25851 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00060 15947 16555 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00054 21136 21840 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00060 14942 15634 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00108 13553 14257 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00012 5699 6685 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig00183 8676 9779 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00183 9776 10480 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00183 10477 11424 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00460 1309 1836 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00183 7932 8360 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00064 469 849 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00183 7202 7930 cheZ 0/0 100 100 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00352 1146 1637 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00352 1721 2146 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00352 2200 3042 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00352 3070 4311 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00352 4338 5099 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00352 5133 5921 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00293 6748 7424 flgH 0/0 94 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00293 5549 6742 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00293 4613 5548 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00293 1430 3433 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00293 182 1414 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00174 837 1181 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00174 1261 1701 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00183 475 2577 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00183 2574 3791 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00196 8845 9657 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00196 8089 8820 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00064 10939 12105 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00064 12255 13775 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00273 6192 6533 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00273 4148 5944 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00273 3163 4158 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00273 2490 3170 fliH 0/0 100 100 YP_106856 (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00273 916 2496 fliI 1/9 100 99 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00273 458 910 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00390 4304 4846 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00390 3283 4281 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00390 2793 3290 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00390 2131 2625 fliO 0/0 100 99 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00390 1299 2060 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00390 1001 1273 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00390 100 882 fliR 0/0 100 100 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00273 6655 7089 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00002 54493 55086 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 72565 73992 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00064 1919 2779 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00064 880 1902 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00020 33276 33794 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00030 10300 11559 pilB 0/0 100 99 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00030 11556 12773 pilC 0/0 100 99 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00030 12803 13741 pilD 1/9 100 99 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00545 427 1011 pilL 1/15 100 97 YP_111609 (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00344 3854 4333 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00549 1324 2622 pilO 0/0 100 100 YP_111607 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00344 58 554 pilP 0/0 99 99 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig00344 551 2161 pilQ 0/0 100 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00344 2151 3227 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00344 3260 3814 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00545 1328 2434 pilT 0/0 100 100 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00344 4342 6015 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig00296 2830 3441 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00296 1369 2088 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig00306 1343 2023 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig00597 100 1164 tagB-5 0/0 100 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00452 3140 3532 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00460 1877 3724 tsr 0/0 91 100 YP_109900 (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig00195 4983 5477 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00195 5501 7000 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00195 7220 7729 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00195 7722 8183 tssE-5 0/0 100 100 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00195 8220 9962 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00283 4780 7600 tssH-5/clpV 0/0 93 99 YP_111509 (tssH-5/clpV) Clp-type ATPase chaperone protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00283 1725 4748 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00452 2333 3010 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00452 903 2300 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00452 241 888 tssL-5 0/0 100 100 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00182 1 3611 tssM-5 1/9 91 99 YP_111518 (tssM-5) icmF-like protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig00002 70151 72166 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 68999 70150 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 67655 68818 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 66026 67174 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 63028 64551 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 61683 63005 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 60732 61673 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 58939 60735 wcbH 0/0 100 99 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 57986 58924 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 57147 57989 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 56124 57137 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 55068 56108 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 53799 54491 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 53233 53802 wcbN 0/0 100 99 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 51764 52966 wcbO 0/0 100 100 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 50979 51767 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 49445 50977 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 41802 49442 wcbR 0/0 100 100 YP_109384 (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 40888 41805 wcbS 0/0 100 100 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 39504 40823 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 65237 66019 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig00002 64584 65240 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
MinION_barcode19
## [1] "No virulence genes from VFDB database were found"
barcode20_genome
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_2 2991846 2994536 bapA 3/54 100 98 YP_111534 (bapA) Type III secretion system secreted protein BapA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2994533 2994814 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2994811 2995374 bapC 0/0 100 100 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2969961 2970908 basJ 0/0 100 100 YP_111556 (basJ) Type III secretion system protein BsaJ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2986629 2987144 bicA 0/0 100 100 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2998871 2999326 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 3039091 3040685 bimA 2/46 100 97 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig_2 2987163 2989025 bipB 0/0 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2989067 2990326 bipC 0/0 100 100 YP_111537 (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2990812 2991744 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2997181 2998719 bopA 0/0 100 100 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 3004309 3005718 bopC 0/0 100 100 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2995770 2996555 bopE 0/0 100 100 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2990460 2990750 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2999562 3000233 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 3001297 3002358 bprC 0/0 100 100 YP_111526 (bprC) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 3000471 3000914 bprD 0/0 100 100 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2966650 2967629 bprP 1/8 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_1 3828424 3829122 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_2 2970913 2971215 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2971275 2971544 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2971541 2972827 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2973338 2973979 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2973993 2975870 bsaO 1/15 100 99 YP_111551 (bsaO) Type III secretion system protein BsaO [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2975867 2976988 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2977024 2979096 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2979108 2979515 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2979512 2980819 bsaS 0/0 100 100 YP_111547 (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2980816 2981280 bsaT 0/0 100 100 YP_111546 (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2981258 2982547 bsaU 1/12 100 99 YP_111545 (bsaU) Type III secretion system protein BsaU [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2982544 2983515 bsaV 0/0 100 100 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2984221 2984475 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2984509 2985264 bsaY 0/0 100 100 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2985268 2986503 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 258823 259443 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_2 2942655 2943263 bspI3 0/0 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_2 262823 263527 bspR2 0/0 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_2 2943576 2944268 bspR3 0/0 100 100 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_2 1438976 1439680 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_1 1864514 1866256 cdpA 0/0 100 100 YP_107884 (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243]
contig_2 3177371 3178357 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig_1 285160 287448 cheA 1/45 100 98 YP_109902 (cheA) chemotaxis two-component sensor kinase CheA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 279788 280891 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 280888 281592 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 281589 282536 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 284602 285129 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 279044 279472 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 287480 287860 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 278314 279042 cheZ 0/0 100 100 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 704694 705458 flgA 0/0 100 100 YP_106896 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 706483 706974 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 707058 707483 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 707537 708379 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 708407 709648 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 709675 710436 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 710470 711258 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 711279 712001 flgH 0/0 100 99 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 712007 713200 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 713201 714136 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 715316 717319 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 717335 718567 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 704246 704590 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 703726 704166 flgN 0/0 100 100 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 271587 273689 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 273686 274903 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 269839 271590 flhF 0/0 100 100 YP_109889 (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 269034 269846 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 268278 269009 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 297951 299117 fliC 0/0 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 299267 300787 fliD 0/0 100 100 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 666514 666855 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 664469 666265 fliF 0/0 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 663484 664479 fliG 0/0 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 662811 663491 fliH 0/0 100 100 YP_106856 (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 661237 662817 fliI 1/9 100 99 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 660779 661231 fliJ 0/0 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 659337 660746 fliK 0/0 100 100 YP_106853 (fliK) flagellar hook-length control protein FliK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 469468 470010 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 470033 471031 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 471024 471521 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 471689 472183 fliO 0/0 100 100 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 472254 473015 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 473041 473313 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 473432 474214 fliR 0/0 100 100 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 666988 667422 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 3844114 3844707 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3862186 3863613 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 288930 289790 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 287891 288913 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_2 2969377 2969964 orgA 0/0 100 100 YP_111557 (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 2968623 2969408 orgB 2/21 99 97 YP_111558 (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_1 1246462 1246980 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_1 4086679 4087938 pilB 0/0 100 100 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_1 4087935 4089152 pilC 0/0 100 100 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_1 4089182 4090111 pilD 0/0 100 100 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_2 2897098 2897682 pilL 1/15 100 97 YP_111609 (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig_2 2904575 2905054 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig_2 2897682 2899451 pilN 2/6 100 99 YP_111608 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_2 2899463 2900761 pilO 0/0 100 100 YP_111607 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_2 2900772 2901275 pilP 0/0 100 99 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig_2 2901272 2902882 pilQ 0/0 100 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_2 2902872 2903948 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_2 2903981 2904535 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_2 2895675 2896781 pilT 0/0 100 100 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_2 2905063 2906736 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_2 634444 635055 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_2 632983 633702 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_2 2983505 2984185 spaP 0/0 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_2 3018997 3021630 tagAB-5 1/9 100 99 YP_111511 (tagAB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3017915 3018979 tagB-5 0/0 100 100 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3017163 3017918 tagC-5 1/3 100 99 YP_111513 (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3016742 3017134 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_1 282540 284561 tsr 0/0 100 100 YP_109900 (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_2 3033235 3033729 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3031712 3033211 tssC-5 0/0 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3030983 3031492 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3030529 3030990 tssE-5 0/0 100 100 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3028750 3030492 tssF-5 0/0 100 100 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3027740 3028762 tssG-5 0/0 100 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3024720 3027753 tssH-5/clpV 0/0 100 99 YP_111509 (tssH-5/clpV) Clp-type ATPase chaperone protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3021656 3024679 tssI-5 0/0 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3015935 3016612 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3014505 3015902 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3013843 3014490 tssL-5 0/0 100 99 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_2 3009811 3013831 tssM-5 3/63 100 98 YP_111518 (tssM-5) icmF-like protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_1 3859772 3861787 wcbA 0/0 100 100 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3858620 3859771 wcbB 0/0 100 100 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3857276 3858439 wcbC 0/0 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3855647 3856795 wcbD 0/0 100 100 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3852649 3854172 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3851304 3852626 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3850353 3851294 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3848560 3850356 wcbH 0/0 100 100 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3847607 3848545 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3846768 3847610 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3845745 3846758 wcbK 0/0 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3844689 3845729 wcbL 0/0 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3843420 3844112 wcbM 0/0 100 100 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3842854 3843423 wcbN 0/0 100 99 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3841385 3842587 wcbO 0/0 100 100 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3840600 3841388 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3839066 3840598 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3831429 3839063 wcbR 1/6 100 100 YP_109384 (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3830515 3831432 wcbS 0/0 100 99 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3829131 3830450 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3854858 3855640 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3854205 3854861 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
barcode21_genome
Contig Start End Gene Gaps Coverage Identity Accession Product
contig_31 89480 92175 bapA 13/59 100 97 YP_111534 (bapA) Type III secretion system secreted protein BapA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 89202 89483 bapB 0/0 100 100 YP_111533 (bapB) acyl carrier protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 88641 89205 bapC 1/1 100 99 YP_111532 (bapC) invasion protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 113129 114076 basJ 0/0 100 100 YP_111556 (basJ) Type III secretion system protein BsaJ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 96877 97392 bicA 0/0 100 100 YP_111539 (bicA) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 84667 85122 bicP 0/0 100 99 YP_111529 (bicP) chaperone [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 43027 44623 bimA 2/46 100 97 YP_111499 (bimA) YadA family of bacterial autotransporter mediating actin tail formation [BimA (VF0427)] [Burkholderia pseudomallei K96243]
contig_31 94995 96858 bipB 1/1 100 100 YP_111538 (bipB) Type III secretion system translocator protein BipB [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 93693 94953 bipC 1/1 100 100 YP_111537 (bipC) Type III secretion system translocator protein BipC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 92275 93207 bipD 0/0 100 100 YP_111535 (bipD) Type III secretion system needle tip protein BipD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 85274 86811 bopA 2/3 100 99 YP_111530 (bopA) putative Type III secretion system effector BopA [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 78208 79617 bopC 0/0 100 100 YP_111522 (bopC) Type III secretion system effector BopC [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 87438 88239 bopE 10/16 100 97 YP_111531 (bopE) Type III secretion system secreted effector G-nucleotide exchange factor [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 93269 93559 bprA 0/0 100 100 YP_111536 (bprA) HNS-like regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 83760 84431 bprB 0/0 100 100 YP_111528 (bprB) two-component response regulator [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 81569 82630 bprC 0/0 100 100 YP_111526 (bprC) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 83079 83522 bprD 0/0 100 100 YP_111527 (bprD) Type III secretion system secreted protein BprD [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 116417 117397 bprP 1/9 100 99 YP_111559 (bprP) regulatory protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_1 29353 30049 BPSL2786 0/0 100 100 YP_109381 (BPSL2786) acetyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_31 112822 113124 bsaK 0/0 100 100 YP_111555 (bsaK) Type III secretion system protein BsaK [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 112493 112762 bsaL 0/0 100 99 YP_111554 (bsaL) Type III secretion system protein BsaL [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 111210 112496 bsaM 0/0 100 100 YP_111553 (bsaM) Type III secretion system protein BsaM [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 110057 110698 bsaN 0/0 100 100 YP_111552 (bsaN) AraC family transcriptional regulator regulates basal T6SS1 expression [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 108166 110043 bsaO 1/15 100 99 YP_111551 (bsaO) Type III secretion system protein BsaO [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 107048 108169 bsaP 1/15 100 99 YP_111550 (bsaP) Type III secretion system gate keeper protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 104940 107012 bsaQ 0/0 100 100 YP_111549 (bsaQ) Type III secretion system protein BsaQ [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 104521 104928 bsaR 0/0 100 99 YP_111548 (bsaR) Type III secretion system protein BsaR [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 103217 104524 bsaS 0/0 100 100 YP_111547 (bsaS) ATP synthase [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 102756 103220 bsaT 0/0 100 100 YP_111546 (bsaT) Type III secretion system protein BsaT [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 101487 102778 bsaU 3/14 100 98 YP_111545 (bsaU) Type III secretion system protein BsaU [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 100509 101490 bsaV 2/14 100 98 YP_111544 (bsaV) Type III secretion system protein BsaV [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 99547 99801 bsaX 0/0 100 100 YP_111542 (bsaX) Type III secretion system protein BsaX [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 98757 99513 bsaY 1/1 100 99 YP_111541 (bsaY) Type III secretion system protein BsaY [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 97518 98753 bsaZ 0/0 100 100 YP_111540 (bsaZ) YscU homolog component of the inner membrane ring [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_19 174251 174871 bspI2 0/0 100 100 YP_111193 (bspI2) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_31 140668 141274 bspI3 1/2 100 100 YP_111576 (bspI3) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_19 170151 170857 bspR2 2/2 100 100 YP_111189 (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_31 139659 140355 bspR3 4/4 100 99 YP_111575 (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_50 50432 51136 bspR4 0/0 100 100 YP_110332 (bspR4) LuxR family transcriptional regulator [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_8 15721 17463 cdpA 0/0 100 100 YP_107884 (cdpA) cyclic di-GMP phosphodiesterase [CdpA (VF0432)] [Burkholderia pseudomallei K96243]
contig_83 87219 88205 chbp 0/0 100 100 YP_111397 (chbp) Type III secretion system secreted effector CHBP cyclomodulin Cif homolg [TTS3 (SS014)] [Burkholderia pseudomallei K96243]
contig_54 273831 276119 cheA 1/45 100 98 YP_109902 (cheA) chemotaxis two-component sensor kinase CheA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 280388 281491 cheB 0/0 100 100 YP_109897 (cheB) chemotaxis-specific methylesterase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 279687 280391 cheD 0/0 100 100 YP_109898 (cheD) chemoreceptor glutamine deamidase CheD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 278743 279690 cheR 0/0 100 100 YP_109899 (cheR) chemotaxis protein methyltransferase [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 276150 276677 cheW 0/0 100 100 YP_109901 (cheW) chemotaxis protein CheW [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 281807 282235 cheY 0/0 100 100 YP_109896 (cheY) chemotaxis protein CheY [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 273419 273799 cheY1 0/0 100 99 YP_109903 (cheY1) chemotaxis two-component response regulator CheY1 [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 282237 282965 cheZ 0/0 100 100 YP_109895 (cheZ) chemotaxis regulator CheZ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 402501 403264 flgA 1/1 100 100 YP_106896 (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 400985 401476 flgB 0/0 100 100 YP_106897 (flgB) flagellar basal-body rod protein FlgB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 400476 400901 flgC 0/0 100 100 YP_106898 (flgC) flagellar basal body rod protein FlgC [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 399581 400423 flgD 1/9 99 99 YP_106899 (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 398312 399553 flgE 0/0 100 100 YP_106900 (flgE) flagellar hook protein FlgE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 397524 398285 flgF 0/0 100 100 YP_106901 (flgF) flagellar basal body rod protein FlgF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 396702 397490 flgG 0/0 100 100 YP_106902 (flgG) flagellar basal body rod protein FlgG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 395959 396681 flgH 0/0 100 100 YP_106903 (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 394760 395953 flgI 0/0 100 100 YP_106904 (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 393824 394759 flgJ 0/0 100 100 YP_106905 (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 390641 392644 flgK 0/0 100 100 YP_106907 (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 389393 390625 flgL 0/0 100 100 YP_106908 (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 403368 403712 flgM 0/0 100 100 YP_106895 (flgM) negative regulator of flagellin synthesis [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 403792 404234 flgN 2/2 100 99 YP_106894 (flgN) flagella synthesis protein FlgN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 287591 289693 flhA 0/0 100 100 YP_109890 (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 286377 287594 flhB 0/0 100 100 YP_109891 (flhB) flagellar biosynthesis protein FlhB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 289690 291441 flhF 0/0 100 100 YP_109889 (flhF) flagellar biosynthesis regulator FlhF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 291434 292246 flhG 0/0 100 100 YP_109888 (flhG) flagellar biosynthesis protein FlhG [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 292271 293002 fliA 0/0 100 100 YP_109887 (fliA) flagellar biosynthesis sigma factor [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 262162 263329 fliC 1/1 100 100 YP_109915 (fliC) flagellin [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 260487 262010 fliD 3/4 100 99 YP_109916 (fliD) flagellar capping protein FliD [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 441096 441437 fliE 0/0 100 100 YP_106859 (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 441684 443481 fliF 3/3 100 100 YP_106858 (fliF) flagellar M-ring protein FliF [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 443471 444465 fliG 1/1 100 100 YP_106857 (fliG) flagellar motor switch protein G [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 444458 445137 fliH 1/1 100 100 YP_106856 (fliH) flagellar assembly protein H [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 445131 446721 fliI 2/19 100 99 YP_106855 (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 446727 447178 fliJ 1/1 100 99 YP_106854 (fliJ) flagellar protein FliJ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 447211 448621 fliK 1/1 100 99 YP_106853 (fliK) flagellar hook-length control protein FliK [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 66394 66936 fliL 0/0 100 100 YP_106651 (fliL) flagellar basal body protein FliL [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 65373 66371 fliM 0/0 100 100 YP_106652 (fliM) flagellar motor switch protein FliM [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 64883 65380 fliN 0/0 100 100 YP_106653 (fliN) flagellar motor switch protein FliN [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 64221 64715 fliO 0/0 100 99 YP_106654 (fliO) flagellar protein FliO [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 63389 64150 fliP 0/0 100 100 YP_106655 (fliP) flagellar biosynthesis protein FliP [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 63091 63363 fliQ 0/0 100 100 YP_106656 (fliQ) flagellar biosynthesis protein FliQ [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 62190 62972 fliR 0/0 100 99 YP_106657 (fliR) flagellar biosynthetic protein FliR [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_9 440540 440974 fliS 0/0 100 100 YP_106860 (fliS) flagellar protein FliS [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_1 13764 14357 gmhA 0/0 100 100 YP_109390 (gmhA) phosphoheptose isomerase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_65 34048 35475 manC 0/0 100 100 YP_109405 (manC) GDP-mannose pyrophosphorylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_54 271489 272349 motA 0/0 100 100 YP_109905 (motA) flagellar motor protein MotA [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_54 272366 273388 motB 0/0 100 100 YP_109904 (motB) flagellar motor protein MotB [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_31 114073 114660 orgA 0/0 100 100 YP_111557 (orgA) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 114629 115423 orgB 1/12 100 98 YP_111558 (orgB) Type III secretion system protein [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_19 483101 483619 pilA 0/0 100 100 YP_107407 (pilA) type IV fimbrial pilin protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_80 37162 38420 pilB 1/1 100 99 YP_109603 (pilB) type IV pilus assembly protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_80 35948 37165 pilC 0/0 100 100 YP_109604 (pilC) type IV pilus assembly protein PilC [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_80 34989 35918 pilD 0/0 100 100 YP_109605 (pilD) type IV prepilin leader peptide type M1 [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_78 38298 38882 pilL 1/15 100 97 YP_111609 (pilL) type IV pilus biosynthesis protein PilL [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig_78 45779 46258 pilM 0/0 100 100 YP_111602 (pilM) type IV pilus inner membrane platform protein PilM [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig_78 38882 40653 pilN 4/8 100 99 YP_111608 (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_78 40665 41963 pilO 2/2 100 99 YP_111607 (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_78 41974 42479 pilP 2/2 100 99 YP_111606 (pilP) type IV pilus biogenesis protein PilP [type IV pili (AI120)] [Burkholderia pseudomallei K96243]
contig_78 42476 44086 pilQ 0/0 100 100 YP_111605 (pilQ) type IV pilus biosynthesis protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_78 44076 45152 pilR 0/0 100 100 YP_111604 (pilR) type IV pilus biosynthesis protein PilR [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_78 45185 45739 pilS 0/0 100 99 YP_111603 (pilS) major pilin subunit [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_78 36875 37981 pilT 0/0 100 100 YP_111610 (pilT) twitching motility protein [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_78 46267 47940 pilV 0/0 100 100 YP_111601 (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0431)] [Burkholderia pseudomallei K96243]
contig_2 203264 203875 pmlI/bspI1 0/0 100 100 YP_110894 (pmlI/bspI1) N-acylhomoserine lactone synthase [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_2 201803 202522 pmlR/bspR1 0/0 100 100 YP_110896 (pmlR/bspR1) N-acylhomoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]
contig_31 99837 100519 spaP 2/2 100 100 YP_111543 (spaP) surface presentation of antigens protein SpaP [Bsa T3SS (VF0428)] [Burkholderia pseudomallei K96243]
contig_31 62094 64729 tagAB-5 3/11 100 99 YP_111511 (tagAB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 64747 65812 tagB-5 1/1 100 99 YP_111512 (tagB-5) Type VI secretion system protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 65809 66565 tagC-5 2/4 100 99 YP_111513 (tagC-5) Type VI secretion system protein TssF [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 66594 66986 tagD-5 0/0 100 100 YP_111514 (tagD-5) Type VI secretion system protein TssG [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_54 276718 278739 tsr 0/0 100 100 YP_109900 (tsr) methyl-accepting chemotaxis protein I [Flagella (VF0430)] [Burkholderia pseudomallei K96243]
contig_31 50012 50506 tssB-5 0/0 100 100 YP_111503 (tssB-5) Type VI secretion system protein TssA [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 50530 52031 tssC-5 2/2 100 100 YP_111504 (tssC-5) Type VI secretion system protein TssB [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 52251 52760 tssD-5 0/0 100 100 YP_111505 (tssD-5) hemolysin-coregulated protein Hcp1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 52753 53214 tssE-5 0/0 100 100 YP_111506 (tssE-5) Type VI secretion system protein TssC [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 53251 54995 tssF-5 4/4 100 99 YP_111507 (tssF-5) Type VI secretion system protein TssD [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 54983 56006 tssG-5 1/1 100 100 YP_111508 (tssG-5) Type VI secretion system protein TssE [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 55993 59011 tssH-5/clpV 3/3 99 99 YP_111509 (tssH-5/clpV) Clp-type ATPase chaperone protein [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 59043 62068 tssI-5 2/2 100 100 YP_111510 (tssI-5) Type VI secretion system protein VgrG1 [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 67116 67793 tssJ-5 0/0 100 100 YP_111515 (tssJ-5) Type VI secretion system protein TssH [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 67826 69223 tssK-5 0/0 100 100 YP_111516 (tssK-5) Type VI secretion system protein TssI [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_31 69238 69885 tssL-5 0/0 100 100 YP_111517 (tssL-5) Type VI secretion system protein TssJ [T6SS-1 (VF0429)] [Burkholderia pseudomallei K96243]
contig_65 35874 37889 wcbA 5/5 100 99 YP_109404 (wcbA) capsule polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_65 37894 39050 wcbB 6/7 100 99 YP_109403 (wcbB) capsular polysaccharide glycosyltransferase biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 30 1194 wcbC 1/1 100 99 YP_109402 (wcbC) capsular polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 1675 2824 wcbD 1/1 100 99 YP_109401 (wcbD) capsule polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 4299 5822 wcbE 0/0 100 100 YP_109398 (wcbE) glycosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 5845 7167 wcbF 0/0 100 99 YP_109397 (wcbF) capsule polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 7177 8118 wcbG 0/0 100 99 YP_109396 (wcbG) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 8115 9911 wcbH 0/0 100 99 YP_109395 (wcbH) glycosyl transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 9926 10864 wcbI 0/0 100 99 YP_109394 (wcbI) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 10861 11703 wcbJ 0/0 100 100 YP_109393 (wcbJ) capsular polysaccharide biosynthesis protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 11713 12727 wcbK 1/1 100 100 YP_109392 (wcbK) GDP sugar epimerase/dehydratase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 12743 13782 wcbL 1/1 100 100 YP_109391 (wcbL) sugar kinase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 14359 15051 wcbM 2/2 100 99 YP_109389 (wcbM) D-glycero-d-manno-heptose 1-phosphate guanosyltransferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 15048 15618 wcbN 1/1 100 99 YP_109388 (wcbN) D-glycero-d-manno-heptose 17-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 15886 17088 wcbO 0/0 100 99 YP_109387 (wcbO) capsule polysaccharide biosynthesis/export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 17085 17873 wcbP 0/0 100 100 YP_109386 (wcbP) capsular polysaccharide biosynthesis dehydrogenase/reductase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 17875 19407 wcbQ 0/0 100 100 YP_109385 (wcbQ) capsular polysaccharide biosynthesis transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 19410 27050 wcbR 2/2 100 100 YP_109384 (wcbR) capsular polysaccharide biosynthesis fatty acid synthase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 27047 27964 wcbS 0/0 100 100 YP_109383 (wcbS) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 28029 29348 wcbT 0/0 100 100 YP_109382 (wcbT) acyl-CoA transferase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 2831 3613 wzm 0/0 100 100 YP_109400 (wzm) capsular polysaccharide export ABC transporter transmembrane protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]
contig_1 3610 4266 wzt2 0/0 100 100 YP_109399 (wzt2) ATP-binding ABC transporter capsular polysaccharide export protein [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]


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Citation

If using TORMES, please cite it as:


Narciso Martin Quijada, David Rodriguez-Lazaro, Jose Maria Eiros, Marta Hernandez (2019). TORMES: an automated pipeline for whole bacterial genome analysis. Bioinformatics, 35(21), 4207–4212, https://doi.org/10.1093/bioinformatics/btz220.


TORMES is a pipeline that relies in many different software and databases that should be cited when using TORMES. The following software and databases were used for this analysis:

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